/reverseBed

Change relative strand orientation of a BED or GTF file

Primary LanguageShell

reverseBed

Change relative strand orientation of a BED or GTF file. The only prerequisite is bedtools in the PATH. Note: Current implementation works with tracks on a single chromosome and uncompressed files.

usage:
  reverseBed.sh [options]
    -i <bed/gtf> Input file.
    -c <center> Center to reverse the bed. Omit to use the midpoint of the input annotation.

example

TODO

  • Implement working with compressed files.
  • Implement grouping by chromosome.