HugoGuillen
Postdoc at DBMR/Inselspital, University of Bern, Switzerland.
https://www.gold-lab.org/Bern, Switzerland.
Pinned Repositories
arff2pandas
Load an ARFF file as a pandas DataFrame.
ezTracks
A script for plotting a single GTF annotation followed by grouped bed files
genehtracker
Gene ID History Tracker
giggle-singularity
Tools for running GIGGLE on Singularity
ipythontoc
Create a table of contents for a iPython notebook
microbialcomposition
Supporting code
otono2016
Material para el taller de Biocomputación de la Escuela de Otoño de Ciencias de la Comptuación, CICESE 2016.
otono2017
Recursos para el Taller de Biocomputación de la escuela de verano en CC, CICESE, 2017.
postsurgicalinfections
Supporting code and pretrained models.
refractiveindex.info-sqlite
SQLite wrapper for the refractiveindex.info database.
HugoGuillen's Repositories
HugoGuillen/refractiveindex.info-sqlite
SQLite wrapper for the refractiveindex.info database.
HugoGuillen/ezTracks
A script for plotting a single GTF annotation followed by grouped bed files
HugoGuillen/genehtracker
Gene ID History Tracker
HugoGuillen/giggle-singularity
Tools for running GIGGLE on Singularity
HugoGuillen/HugoGuillen.github.io
Hugo's personal webpage
HugoGuillen/microbialcomposition
Supporting code
HugoGuillen/postsurgicalinfections
Supporting code and pretrained models.
HugoGuillen/bigwig
bigwig repository
HugoGuillen/blog_snippets
Supplementary code for blog entries
HugoGuillen/BrainRNACompartments
Characterizing the nuclear and cytoplasmic transcriptomes in developing and mature human cortex uncovers new insight into psychiatric disease gene regulation
HugoGuillen/CASPR
CASPR pipeline.
HugoGuillen/codingexercises
HugoGuillen/CRIS.py
Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concurrently.
HugoGuillen/CRISPETA
A really flexible tool to obtain CRISPR paired gRNAs on desired regions of a genome
HugoGuillen/CRISPResso2
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
HugoGuillen/gat
Genomic Association Tester
HugoGuillen/giggle
Interval data structure
HugoGuillen/HiCMatrix
HugoGuillen/HPOworkbench
Human Phenotype Ontology Workbench
HugoGuillen/imorns
Supplementary information for the article "Accurate Classification of Immunomodulatory RNA Sequences" (IJCNN 2017 conference)
HugoGuillen/linkedIn_auto_jobs_applier_with_AI
LinkedIn_AIHawk is a tool that automates the jobs application process on LinkedIn. Utilizing artificial intelligence, it enables users to apply for multiple job offers in an automated and personalized way.
HugoGuillen/mageck-ibar
mageck-ibar is the analysis software for CRISPR/Cas9 with iBAR system applied library screening.
HugoGuillen/micro-course
Code for Informatics nano course
HugoGuillen/mimic3
A fast local neural text to speech engine for Mycroft
HugoGuillen/motif-clustering
Clustering motif models to remove redundancy
HugoGuillen/PMC-LLaMA
The official codes for "PMC-LLaMA: Continue Training LLaMA on Medical Papers"
HugoGuillen/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
HugoGuillen/REAP
RNAseq Expression Analysis Pipeline
HugoGuillen/reverseBed
Change relative strand orientation of a BED or GTF file
HugoGuillen/riboswitch2018
Datasets for "Classification of riboswitch sequences using k-mer frequencies"