HumanCellAtlas/metadata-schema

Issues

• Add dissociation solution, temperature and time in dissociation_protocol

  #1592 opened a month ago by arschat
  0

• Update medication field in medical_history module

  #1589 opened a month ago by arschat
  0

• Add comorbidities field in the donor_organism

  #1569 opened 2 months ago by arschat
  1

• Add disease_profile module in donor_organism

  #1578 opened 2 months ago by arschat
  0

• Extend atlas names in the hca_bionetworks

  #1583 opened 2 months ago by arschat
  0

• Add smoking related fields in medical_history module

  #1565 opened 3 months ago by arschat
  1

• Change EDAM ontology class to EDAM:0006 from data:0006

  #1571 opened 3 months ago by ESapenaVentura
  0

• Add medical_tests module in donor_organism

  #1562 opened 4 months ago by arschat
  0

• Add sequencing_run_batch to sequence_file

  #1557 opened 5 months ago by arschat
  0

• Add intron_inclusion field to analysis_protocol

  #1554 opened 8 months ago by arschat
  1

• Add transplant_organ field in specimen_from_organism

  #1547 opened 9 months ago by arschat
  3

• Track DUOS project id

  #1550 opened 9 months ago by idazucchi
  0

• add data access details to project

  #1535 opened 9 months ago by amnonkhen
  2

• Add gene_annotation_version field to analysis_protocol

  #1543 opened 10 months ago by arschat
  0

• Add alignment_software & alignment_software_version field in analysis_protocol

  #1533 opened a year ago by arschat
  2

• Add transplant field to specimen

  #1531 opened a year ago by idazucchi
  0

• Add timecourse module to specimen from organism, imaged specimen, organoid biomaterials

  #1511 opened a year ago by rachadele
  0

• hca_bionetwork's describedBy pattern is incorrect

  #1527 opened a year ago by amnonkhen
  0

• Update project tab with four metadata entities for grouping Tissue Atlas projects

  #1517 opened 2 years ago by Wkt8
  1

• Add Disease adjacent to specimen form organism

  #1512 opened 2 years ago by idazucchi
  0

• Record Genome version used to generate analysis file

  #1508 opened 2 years ago by ESapenaVentura
  1

• Add timecourse module to specimen

  #1506 opened 2 years ago by idazucchi
  0

• Wrong "Apostrophe" used in matrix.json enum values

  #1410 opened 2 years ago by JoshuaFortriede
  2

• Add illegal characters to schema linter

  #1501 opened 2 years ago by ESapenaVentura
  0

• Fix schema linter to allow for dependencies keyword

  #1485 opened 2 years ago by ESapenaVentura
  1

• Addition of a new protocol schema: treatment_protocol

  #1428 opened 2 years ago by ami-day
  1

• Permeabilisation time and permeabilisation time unit in imaging_preparation_protocol

  #1471 opened 2 years ago by Wkt8
  0

• Update "links.json" with new protocol type

  #1488 opened 2 years ago by ESapenaVentura
  0

• Add "HCA Ingest" as a value for "file_core.file_source" field

  #1487 opened 2 years ago by ESapenaVentura
  0

• Standardise measurement values

  #1479 opened 2 years ago by ESapenaVentura
  0

• New field: Gender Identity

  #1409 opened 3 years ago by ESapenaVentura
  0

• Expand disease ontology to include phenotype

  #1460 opened 3 years ago by idazucchi
  0

• Add "uniqueItems: true" to certain array fields in matrix.json

  #1465 opened 3 years ago by JoshuaFortriede
  0

• Ontologise preservation_storage methods

  #1463 opened 3 years ago by ESapenaVentura
  0

• Re-assess cell_suspension.estimated_cell_count field name

  #1461 opened 3 years ago by ESapenaVentura
  1

• Disallow empty string for file_core.format

  #1459 opened 3 years ago by theathorn
  0

• Include 'Information entity' branch as potential ontology terms for file_content_description

  #1450 opened 3 years ago by Wkt8
  0

• Make Imaging fields non-required: numerical aperture, pixel size and overlapping tiles

  #1441 opened 3 years ago by ESapenaVentura
  0

• Imaging - Field for tracking permeabilisation time for imaged_specimens

  #1453 opened 3 years ago by Wkt8
  0

• Metadata schema update: allow an array of experiment accessions; biosample accessions

  #1440 opened 3 years ago by ami-day
  0

• Make imaging_protocol 'channel' and 'probe' optional

  #1430 opened 3 years ago by Wkt8
  1

• `ega_accessions` and `dbgap_accessions` patterns are missing anchors

  #1425 opened 3 years ago by amarjandu
  1

• Schema update: update library preparation protocol barcode fields

  #1407 opened 3 years ago by ami-day
  2

• Add Nuclei Concentration to Library Preparation Schema

  #1423 opened 3 years ago by rachadele
  0

• Add Nuclei Purification Method to Library Preparation Schema

  #1422 opened 3 years ago by rachadele
  0

• Add Nuclei Resuspension Cycles to Library Preparation Schema

  #1421 opened 3 years ago by rachadele
  0

• Add Nuclei Resuspension Reagent to Library Preparation Schema

  #1420 opened 3 years ago by rachadele
  0

• Add Lysis Method to Library Preparation Schema

  #1419 opened 3 years ago by willrockout
  0

• Move `ncbi_taxon_id` from `biomaterial_core` to `donor_organism`

  #1415 opened 3 years ago by hannes-ucsc
  0

• New module: accessions.json

  #1408 opened 3 years ago by ESapenaVentura
  0