Pinned Repositories
AlSabouniReproducibility
Code for the analysis in AlSabouni, Fenton et al (2018) JMicropal
coastalveg-edge-detection
Notebook demonstrating coastal vegetation edge detection from satellite imagery
connections-workshop-examples
Several scivision examples forked from the Alan Turing Institute's Research Engineering Group Connections Workshop (September 2022)
cryoEM-object-detection
A notebook demonstrating object detection in cryoEM micrographs
empiarreader
Reader for EMPIAR datasets
EoceneLDG
Code for the analysis in Fenton et al (2016) Phil Trans B
FentonRepeatability
Code for the analysis in Fenton et al (2018) JMicropal
ForamsLDG
Code for the analysis in Fenton et al (2016) PLoS ONE
GeneralCode
Code created during my PhD / PostDoc for general purposes
TritonDB
Creation of the Triton database of planktonic foraminifera
IFenton's Repositories
IFenton/TritonDB
Creation of the Triton database of planktonic foraminifera
IFenton/AlSabouniReproducibility
Code for the analysis in AlSabouni, Fenton et al (2018) JMicropal
IFenton/coastalveg-edge-detection
Notebook demonstrating coastal vegetation edge detection from satellite imagery
IFenton/connections-workshop-examples
Several scivision examples forked from the Alan Turing Institute's Research Engineering Group Connections Workshop (September 2022)
IFenton/cryoEM-object-detection
A notebook demonstrating object detection in cryoEM micrographs
IFenton/empiarreader
Reader for EMPIAR datasets
IFenton/EoceneLDG
Code for the analysis in Fenton et al (2016) Phil Trans B
IFenton/FentonRepeatability
Code for the analysis in Fenton et al (2018) JMicropal
IFenton/ForamNiches
Code for quantifying thermal niche lability in planktonic foraminifera across glacial-interglacial cycles (Antell et al. 2021)
IFenton/ForamsLDG
Code for the analysis in Fenton et al (2016) PLoS ONE
IFenton/GeneralCode
Code created during my PhD / PostDoc for general purposes
IFenton/jax-rnn
i teach myself rnns wohoooooooooooo
IFenton/mapreader-plant-scivision
Example data for applying MapReader to classification of plant patches and running this model with the Scivision tool
IFenton/odin
IFenton/pixelflow
IFenton/plankton-classification
Notebook demonstrating plankton images classification
IFenton/plant-phenotyping-classification
IFenton/remote-sensing-reading-group
Info and materials for Turing's Remote Sensing reading group.
IFenton/scivision
scivision: a framework for scientific image analysis
IFenton/scivision-basic-usage-examples
Example notebooks for the scivision project
IFenton/scivision_classifier
IFenton/scivision_huggingface
IFenton/scivision_huggingface_objectdetection
IFenton/scivision_huggingface_segmentation
IFenton/scivision_sentinel2_stac
Scivision plugin for loading accessing Sentinel-2 Cloud-Optimized GeoTIFFs (following tutorial: https://odc-stac.readthedocs.io/en/latest/notebooks/stac-load-e84-aws.html)
IFenton/software_carpentry
IFenton/stardist-seed-pod
IFenton/tree-crown-detection
Notebook demonstrating tree crown detection from drone imagery
IFenton/VEdge_Detector_scivision
New version of original VEdge_Detector repository for integration with SciVision