IFenton/mapreader-plant-scivision

Example data for applying MapReader to classification of plant patches and running this model with the Scivision tool

Classification of plant patches/images using MapReader

Example data for applying MapReader to classification of plant patches and running this model with the Scivision tool

Installation

Create a conda environment:

conda create -n plant_py38 python=3.8
conda activate plant_py38

Install scivision:

pip install scivision
pip install jupyter

Windows users may need to run the following:

# install rasterio and fiona manually
conda install -c conda-forge rasterio=1.2.10
conda install -c conda-forge fiona=1.8.20

# install git
conda install git

Clone scivision repo as notebooks are stored on the repo:

git clone https://github.com/alan-turing-institute/scivision.git

Go to the scivision repo and open jupyter notebook:

cd scivision
jupyter notebook

Run mapreader_plant_scivision.ipynb.