Institute for Genome Sciences

IGS has helped revolutionize genomic discoveries in medicine, agriculture, environmental science and biodefense.

Baltimore, MD

Pinned Repositories

biocode
Bioinformatics script collection
Language:Python6 16 01
Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
Language:C++23 18 218
FADU
Feature Aggregate Depth Utility
Language:Julia10 3 121
gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Language:Jupyter Notebook10 5 6885
HMP_database_builder
Scripts to build the HMP database
Language:Python2 4 00
OSDF
Open Science Data Framework (OSDF)
Language:JavaScript8 5 02
osdf-python
A Python OSDF (Open Science Data Framework) client
Language:Python3 13 13
portal-api
API for the IGS data portal
Language:Python9 4 13
portal-ui
UI for IGS project portals such as the HMP data portal found at https://portal.hmpdacc.org.
Language:JavaScript4 4 020
portal_client
Python-based client for downloading data made available through portals powered by the GDC-based portal system..
Language:Python16 5 2517

Institute for Genome Sciences's Repositories

IGS/Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
Language:C++23 18 218
IGS/portal_client
Python-based client for downloading data made available through portals powered by the GDC-based portal system..
Language:Python16 5 2517
IGS/FADU
Feature Aggregate Depth Utility
Language:Julia10 3 121
IGS/gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Language:Jupyter Notebook10 5 6885
IGS/portal-api
API for the IGS data portal
Language:Python9 4 13
IGS/OSDF
Open Science Data Framework (OSDF)
Language:JavaScript8 5 02
IGS/biocode
Bioinformatics script collection
Language:Python6 16 01
IGS/portal-ui
UI for IGS project portals such as the HMP data portal found at https://portal.hmpdacc.org.
Language:JavaScript4 4 020
IGS/osdf-python
A Python OSDF (Open Science Data Framework) client
Language:Python3 13 13
IGS/HMP_database_builder
Scripts to build the HMP database
Language:Python2 4 00
IGS/imp
IGS Metagenome Assembler
Language:Perl1 17 0
IGS/osdf-deb-docker
A docker container to generate the deb package for OSDF
Language:Shell1 4 0
IGS/osdf-nodejs-client
A node.js client for the Open Science Data Framework (OSDF)
Language:JavaScript1 4 0
IGS/rnaseq-pipeline
IGS Transcriptomics Pipeline
Language:Perl1 7 00
IGS/unified-schema-ecosystem
Language:Python1 4 0
IGS/portal-manifest-downloader
Client for retrieving a Portal data manifest file from the cloud
Language:Python0 9 00
IGS/report-generator
Repository for new python based report and bdbag generator.
Language:Python0 5 00
IGS/rnaseq-docker
Dockerized version of the IGS transciptomics pipeline and associated utilities
Language:Python0 6 00
IGS/cvd-scripts
Language:Python2 0
IGS/disease-ontology
Disease Ontology
3 0
IGS/docker_lgtview
This repository houses a Dockerfile that can be used to build an example and customizable instance of LGTview
Language:Shell4 0
IGS/Emergence
A biological sequence annotation and analysis system.
Language:Python19 0
IGS/ergatis
Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines.
Language:Perl16 0
IGS/GALES
Genomic Annotation Logic and Execution System
Language:Python1 0
IGS/grove-pipeline
The IGS RNASeq SNP pipeline
Language:Perl5 0
IGS/LGTHGT
Contains LGTView (http://www.igs.umaryland.edu/labs/lgthgt/analysis/lgt-view/) and all of its necessary installation components.
Language:HTML3 0
IGS/lgtseek-pipeline
The IGS lateral gene transfer pipeline
Language:Perl5 0
IGS/twinblast
View 2 blast reports at once
Language:Perl7 0
IGS/vmrc-osdf-schemas
OSDF JSON-Schema files for the Vaginal Microbiome Research Consortium (VMRC)
4 0