IGS/gEAR

Issues

• Gene Mapping System Used in Inner Ear Organoid (Steinhart) Dataset

  #653 opened 5 months ago by gear-portal-team
  4

• Refactor user account creation page for UI-V2

  #660 opened 5 months ago by jorvis
  0

• Ensure history recording functions on main are also on ui-v2 branch

  #659 opened 5 months ago by jorvis
  0

• refactor compare_datasets.js

  #616 opened 5 months ago by adkinsrs
  5

• Update Flask to v3.0.0

  #621 opened 8 months ago by adkinsrs
  4

• Download Raw or Seurat Object

  #658 opened 5 months ago by gear-portal-team
  1

• primary analysis - ScRNA-seq - P8, P12, P20 mouse cochlea (Michalski 2023)

  #625 opened 5 months ago by gear-portal-team
  4

• Gene Collection Selector - Error when selecting "Recent"

  #657 opened 5 months ago by adkinsrs
  0

• ui-v2 Refactor projection search page

  #656 opened 5 months ago by adkinsrs
  0

• Decouple orthology mapping from plotting API calls; Create "orthologs" dropdown

  #649 opened 5 months ago by adkinsrs
  1

• Database download for enrichment analysis

  #651 opened 5 months ago by gear-portal-team
  2

• Changing scoring method results in nonsensical values for svgs

  #642 opened 5 months ago by JPReceveur
  3

• Expression page - Add ability to download expression data for just a gene or subset of genes

  #648 opened 5 months ago by adkinsrs
  0

• Index and expression page - highlight region if no dataset collection selected after searching

  #645 opened 5 months ago by adkinsrs
  1

• SC-Workbench - possibility of subclustering

  #647 opened 5 months ago by adkinsrs
  0

• SC workbench - ability to download intermediate h5ad files

  #646 opened 5 months ago by adkinsrs
  0

• Compare tool - add DESeq significance testing

  #644 opened 5 months ago by adkinsrs
  0

• Compare tool - add FDR correction for statistical tests

  #643 opened 5 months ago by adkinsrs
  0

• gene expression search behavior for missing genes

  #641 opened 5 months ago by JPReceveur
  0

• Exact match behavior when using multigenes

  #640 opened 5 months ago by JPReceveur
  0

• Replace nice-select2 gene search dropdowns with simple autocomplete

  #639 opened 6 months ago by adkinsrs
  0

• Throw warning in dataset explorer when searching with too few characters

  #638 opened 6 months ago by JPReceveur
  0

• Test Plan

  #629 opened 8 months ago by RLC-DCPPC
  3

• Write test suites

  #637 opened 7 months ago by adkinsrs
  0

• Setup devel server as a Github Actions self-hosted runner

  #632 opened 7 months ago by adkinsrs
  1

• Visualizing marker genes return an error

  #634 opened 7 months ago by beamilon
  3

• Gene Collection Manager - Improve Partial Name matching

  #636 opened 7 months ago by adkinsrs
  0

• Rewrite "gene cart manager" (gene lists) page

  #622 opened 7 months ago by adkinsrs
  9

• Refactor of Single Gene Curator

  #635 opened 7 months ago by DanLesperance
  4

• download of weighted gene carts writes empty file

  #617 opened 7 months ago by carlocolantuoni
  3

• Some uploads failing due to character set

  #633 opened 7 months ago by jorvis
  3

• Adding the ability to make two equal sized datasets in one row of a profile

  #630 opened 8 months ago by JPReceveur
  1

• Dotplot on Multigene Displays Scrunching Dots Together after large amount of genes in display

  #631 opened 8 months ago by DanLesperance
  1

• Create utility script to add metadata to columns for Carlo

  #619 opened 8 months ago by jorvis
  1

• H5AD file read error shows up as "Resources are busy ..."

  #628 opened 8 months ago by jorvis
  2

• Issue with dataset

  #627 opened 8 months ago by gear-portal-team
  2

• URGENT: gEAR website not loading at all

  #624 opened 8 months ago by kmgwilliam
  1

• Delete dataset display where analysis was deleted.

  #623 opened 8 months ago by adkinsrs
  0

• add ability to control dot size in static tSNE/MAP scatters

  #618 opened 8 months ago by carlocolantuoni
  5

• Write v2 widget to save genes as gene cart

  #610 opened 8 months ago by adkinsrs
  2

• Update pandas to v2+

  #620 opened 8 months ago by adkinsrs
  0

• add ability to flip axes in static tSNE/UMAP display curation

  #615 opened 8 months ago by carlocolantuoni
  3

• Unable to upload the tar file

  #614 opened 9 months ago by gear-portal-team
  2

• Test 2

  #613 opened 9 months ago by gear-portal-team
  0

• Testing if Dan gets auto-assigned

  #612 opened 9 months ago by gear-portal-team
  1

• Reimplement common login system

  #611 opened 9 months ago by jorvis
  1

• Error caused by not all parts of primary analysis present in a dataset

  #609 opened 9 months ago by JPReceveur
  7

• Feedback for new dataset curator

  #608 opened 10 months ago by clshults
  0

• Enquiry about downloading data

  #607 opened 10 months ago by gear-portal-team
  1

• nemoarchive_import - Refactor "fetch" functions to "axios" functions

  #606 opened 10 months ago by adkinsrs
  0