Update pandas to v2+

Question

Update pandas to v2+

Closed this issue in 2 hours · 2 comments

I generally keep my Dockerized code as close to the server code as possible with respect to package versions and so on. Currently I am running Pandas 1.4.1, but Pandas is beyond 2.0.0 now, which deprecates some methods (and I think removes some). I don't think this is high priority in the slightest, but eventually it would be a good idea to sweep through the code and fix any code that would be problematic for updating Pandas

Answer 1 · 2024-03-14T16:24:55.000Z

Did a quick check, upgrading Pandas to 2.2.0 and it seems to be incompatible with scanpy 1.8.2 which we current use

Answer 2 · 2024-07-22T19:59:04.000Z

this is being used in v2