Update on genotyping option?

[katherinef]

Hello,

I know this has been requested before, but are there any immediate plans to implement an option to genotype a list of variants supplied in an input VCF (similar to the forcedGT option in Strelka2). I am working with a large cohort and would like to call SVs in a subset and then genotype these SVs across the full cohort.

Many thanks,

Kath

[jjfarrell]

I am also interested in this feature for genotyping across a cohort of 5k samples.

[biozzq]

Hi I think you can try GenomeSTRiP/Paragraph/graphtyper.