Pinned Repositories
dicom-microscopy-viewer
Web-based DICOM slide microscopy viewer library
dicomweb-client
Python client for DICOMweb RESTful services
highdicom
High-level DICOM abstractions for the Python programming language
idc-index
Python package to simplify access to the data available from NCI Imaging Data Commons
IDC-Tutorials
Self-guided notebook tutorials to help get started with using IDC
libdicom
C library for reading DICOM files
nnU-Net-BPR-annotations
Code accompanying this dataset: Krishnaswamy, D., Bontempi, D., Clunie, D., Aerts, H. & Fedorov, A. AI-derived annotations for the NLST and NSCLC-Radiomics computed tomography imaging collections. (2022). doi:10.5281/zenodo.7473970
pyplastimatch
Python wrapper for Plastimatch.
SlicerIDCBrowser
A 3D Slicer extension to support access to the content of NCI Imaging Data Commons
slim
Interoperable web-based slide microscopy viewer and annotation tool
Imaging Data Commons's Repositories
ImagingDataCommons/dicomslide
Python library for reading whole slide images in DICOM format
ImagingDataCommons/idc-wsi-conversion
(CORE REPO)
ImagingDataCommons/nnU-Net-BPR-annotations
Code accompanying this dataset: Krishnaswamy, D., Bontempi, D., Clunie, D., Aerts, H. & Fedorov, A. AI-derived annotations for the NLST and NSCLC-Radiomics computed tomography imaging collections. (2022). doi:10.5281/zenodo.7473970
ImagingDataCommons/idc-vertebrae-ct-segmentation
ImagingDataCommons/IDC-Viewer-Support
Resources to support OHIF Deployment
ImagingDataCommons/PyDicomVerify
This project is a tool for verification of Dicom files and attributes in python
ImagingDataCommons/CloudFunctions
(CORE REPO)
ImagingDataCommons/idc-comppath-reproducibility
Classification of lung tumor slide images with the NCI Imaging Data Commons
ImagingDataCommons/tcia_download
Download TCIA collections to GCS (CORE REPO)
ImagingDataCommons/CloudSegmentatorResults
ImagingDataCommons/idc-dicom-seg-conversions
Examples for converting prostate MRI-US-Biopsy STL prostate and lesion surfaces to DICOM SEG and DICOM STL.
ImagingDataCommons/idc-pathomics-use-case-1
Initial IDC pathomics use case implementation
ImagingDataCommons/idc-radiomics-reproducibility
Transparent and Reproducible AI-based Medical Imaging Pipelines Using the Cloud.
ImagingDataCommons/libdicomicc
C library for using ICC profiles to correct color images
ImagingDataCommons/NLM-Visible-Human-Project-DICOM-Conversion
ImagingDataCommons/pywsidicom
ImagingDataCommons/RealtimeCosts
System for estimating realtime burn rates
ImagingDataCommons/TCIA-IDC-Coordination
ImagingDataCommons/crdc_compound_objects
ImagingDataCommons/dcm-docbook-tools
ImagingDataCommons/dicom-wg26-connectathon-2024-consumer-tasks
Source code for the IDC's entry into the 2024 DICOM Working Group 26's connectathon as the "consumer" role
ImagingDataCommons/ETL
(CORE REPO)
ImagingDataCommons/IDC-Admin
Scripts to help in project admin (CORE REPO)
ImagingDataCommons/IDC-Cron
Cron jobs run for IDC monitoring (CORE REPO)
ImagingDataCommons/IDC4MICCAI
ImagingDataCommons/isbi_tutorial_2024
ImagingDataCommons/ohif-idc-mode
OHIF IDC Mode
ImagingDataCommons/open-data-registry
A registry of publicly available datasets on AWS
ImagingDataCommons/ProjectWeek
Website for NA-MIC Project Weeks