InfOmics

University of Verona

Pinned Repositories

APPAGATO
an APproximate PArallel and stochastic GrAph querying TOol for biological networks
Language:Cuda0 2 00
CRISPRitz
Tool package to perform in-silico CRISPR analysis and assessment
Language:Python3 1 01
cuRnet
An R package for graph traversing on GPU.
Language:Cuda4 2 14
GRAFIMO
Graph-based Finding of Individual Motif Occurrences
Language:Python5 5 20
LErNet
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
Language:R0 5 01
PanDelos
A dictionary-based method for pan-genomic contents discovery.
Language:Java3 2 03
PANPROVA
PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies
Language:C++7 3 10
RI
RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints.
Language:C++19 3 310
RI-DS
A subgraph isomorphism algorithm.
Language:C++13 2 05
stardust
Language:R3 3 12

InfOmics's Repositories

InfOmics/RI
RI is a general purpose algorithm for one-to-one exact subgraph isomorphism problem maintaining topological constraints.
Language:C++19 3 310
InfOmics/RI-DS
A subgraph isomorphism algorithm.
Language:C++13 2 05
InfOmics/PANPROVA
PANPROVA: PANgenomic PROkaryotic eVolution of full Assemblies
Language:C++7 3 10
InfOmics/GRAFIMO
Graph-based Finding of Individual Motif Occurrences
Language:Python5 5 20
InfOmics/CRISPRitz
Tool package to perform in-silico CRISPR analysis and assessment
Language:Python3 1 01
InfOmics/Esearch3D
Language:R3 4 02
InfOmics/PanDelos
A dictionary-based method for pan-genomic contents discovery.
Language:Java3 2 03
InfOmics/stardust
Language:R3 3 12
InfOmics/CRISPRme
Language:Python2 1 0
InfOmics/FocusSearchCpp
C++ implementation of FocusSearch (originally implemented in Modula2 by Ullmann)
Language:C++2 2 03
InfOmics/MUVIG
Imaging genetics workflow to find Parkinson's Disease potential genetic biomarkers.
Language:Jupyter Notebook20
InfOmics/GRAPES
A software for parallel searching on biological graphs targeting multi-core architectures.
Language:C++1 2 00
InfOmics/InfOmics
InfOmics website
Language:SCSS1 4 02
InfOmics/ADAIR-Project
This repository contains the scripts used within ADAIR, an EU Joint Programme - Neurodegenerative Disease Research (JPND) project. This research was supported by the ADAIR project (grant #JPND2019-466-037)
Language:R0 2 00
InfOmics/DiGAS
A novel computational model for identifying genomic elements (from single exon to entire genomic regions) that are linked to a given phenotypic condition (i.e. a disease) investigating for single nucleotide polymorphisms (SNP).
Language:Python0 2 00
InfOmics/EasyCircR
Language:Perl0 5 00
InfOmics/IGTools
Infogenomics Tools: A Computational Suite for Informational Analyses of Genomes.
Language:Java0 2 21
InfOmics/LErNet
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
Language:R0 5 01
InfOmics/TEDAR
Detection of adverse drug reactions in pharmacovigilance spontaneous reports
Language:Jupyter Notebook0 3 00
InfOmics/APBIO
InfOmics/APDB
Language:HTML1
InfOmics/grapes-dd
Language:C++1 0
InfOmics/InfOmics-website2.0
website restyling
Language:SCSS5 0
InfOmics/MiningPDGeneticsImagingTutorial
ICHI 2021 Tutorial - Mining genetic, transcriptomic, and imaging data in Parkinson’s disease
Language:HTML3 0
InfOmics/PanDelos-frags
A version of PanDelos that discovers pangenomic content in fragmented genomes
Language:Java
InfOmics/PanDelos-frags-SUPP
This repository contains scripts to run the analyses performed in the methodological paper PanDelos-frags (tool available at InfOmics/PanDelos-frags)
InfOmics/PLB2020
Materials of the course Programming Laboratory for Bioinformatics 2020-21
Language:R4
InfOmics/rCASC
rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
Language:R1 01
InfOmics/RI-centralities
A version of RI based on network centrality measures
Language:C++1 0
InfOmics/Simpati
Pathway-based classifier exploits patient similarity network paradigm for interpretability and explainability
Language:R0 0