Pinned Repositories
nf-umap
Nextflow WGS mapping workflow to map historical specimen using bwa
nf-Hestu
A nextflow workflow to estimate heterozygosity through a genotype likelihood based approach as implemented in ANGSD
bingo-tools
Tools and scripts used for various steps in a bioinformatics workflow
checksum_scilife
A short script to check md5sums from SciLife deliveries which come with provided .md5 files
nf-polish
A reproducible pipeline for polishing DNA reads, with a particular focus on sequence data from museum specimens
nf_mito-mania
Nextflow pipeline that assembles mitochondria scaffolds using mitobim and checked scaffold by mapping reads to it using bwa mem and calls variants in freebayes for a consensus sequence.
nf_mito-mania
Nextflow pipeline that assembles mitochondria scaffolds using mitobim and checked scaffold by mapping reads to it using bwa mem and calls variants in freebayes for a consensus sequence.
IngoMue's Repositories
IngoMue/nf-Hestu
A nextflow workflow to estimate heterozygosity through a genotype likelihood based approach as implemented in ANGSD
IngoMue/bingo-tools
Tools and scripts used for various steps in a bioinformatics workflow
IngoMue/nf-umap
Nextflow WGS mapping workflow to map historical specimen using bwa
IngoMue/nf_mito-mania
Nextflow pipeline that assembles mitochondria scaffolds using mitobim and checked scaffold by mapping reads to it using bwa mem and calls variants in freebayes for a consensus sequence.
IngoMue/checksum_scilife
A short script to check md5sums from SciLife deliveries which come with provided .md5 files
IngoMue/nf-polish
A reproducible pipeline for polishing DNA reads, with a particular focus on sequence data from museum specimens