Joint BioEnergy Institute

5885 Hollis St, Emeryville, CA 94608

Pinned Repositories

ART
A machine learning tool to improve the effectiveness of strain engineering in synthetic biology
Language:Jupyter Notebook54 16 220
clusterCAD
A computational platform for type I modular PKS and NRPS design
Language:Scheme11 11 126
dnada
DNAda is a web application that integrates the J5 DNA assembly software with robotic liquid handlers
Language:Python8 5 01
edd
Repository of standardized biological experimental data and metadata
Language:Python15 8 1112
foldy
Foldy: a web-based platform for interactive protein structure analysis
Language:TypeScript21 3 252
ice
Web based Registry platform for managing synthetic biological parts
Language:Java41 15 9324
jqmm
JBEI Quantitative Metabolic Modeling library
Language:Jupyter Notebook12 8 210
KineticLearning
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
Language:Jupyter Notebook28 12 017
prpr
Language:Python16 13 04
vectoreditor
Web based DNA sequence editing and analysis tool
Language:ActionScript14 15 68

Joint BioEnergy Institute's Repositories

JBEI/prpr
Language:Python16 13 04
JBEI/CASdesigner
A Web tool to help you design donor DNA cassettes for genomic integration
Language:Jupyter Notebook3 8 01
JBEI/MiSeqValPipeline
Sequence Validation Pipeline for JBEI
Language:Python3 11 02
JBEI/PIACE
Parallel Integration and Chromosomal Expansion of Metabolic Pathways Machine Learning Analysis
Language:Jupyter Notebook3 9 02
JBEI/casdesigner-web
Web app version of CASdesigner
Language:Python2 7 12
JBEI/openVectorEditor
Language:JavaScript2 5 13
JBEI/bioflex
Language:ActionScript1 11 00
JBEI/dna-constructor
Language:HTML1 13 02
JBEI/dnassemble-gui
Language:HTML1 11 01
JBEI/limitfluxtocore
JBEI Limit Flux To Core (lftc) Python library
Language:Jupyter Notebook1 12 12
JBEI/parpar
1 10 0
JBEI/ice-docs
Documentation for ICE
Language:HTML0 6 00