JBris
Currently working from home.
Bioeconomy Science Institute | Massey UniversityAuckland, New Zealand
Pinned Repositories
fastapi-react-graphql
Example of a simple FastAPI and React app using GraphQL
model-calibration-evaluation
Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference
multivariate_analysis_examples
Several examples of multivariate techniques implemented in R, Python, and SAS. Multivariate concrete dataset retrieved from https://archive.ics.uci.edu/ml/datasets/Concrete+Slump+Test. Credit to Professor I-Cheng Yeh.
nextflow-graph-machine-learning
A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.
prefect-surrogate-models
Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.
react-typescript-graphql
A simple search tool to retrieve git repo information from GitHub, GitLab, and Bitbucket. Uses TypeScript and GraphQL for server-side API searches, and React.js for client-side rendering.
stan-cmdstanr-docker
A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling
time_series_anomaly_detection_examples
Several examples of anomaly detection algorithms for time series data.
vue-python-graphql
A simple search tool to retrieve git repo information from GitHub, GitLab, and Bitbucket. Uses aiohttp and Graphene for server-side API searches, and Vue.js for client-side rendering.
calisim
A toolbox for the calibration and evaluation of simulation models.
JBris's Repositories
JBris/model-calibration-evaluation
Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference
JBris/clearml-testing
Testing out ClearML.
JBris/kubernetes-kind-examples
Local test deployment of Kubernetes over Kind with Helm, the Argo ecosystem and others installed.
JBris/vetiver-deployment-test
Testing deploying R models using vetiver.
JBris/AgentTorch-testing
Testing out AgentTorch for agent-based modelling
JBris/auto-feature-engineering
Automated feature engineering
JBris/bayesian-oed-opt-al
Bayesian optimal experimental design, optimisation, and active learning with different acquisition functions
JBris/flyte-testing
Testing flyte
JBris/generative-stat-models
Testing out statistical models for generating synthetic tabular data.
JBris/jupyter-sphinx-test
Testing rendering Jupter notebooks in Sphinx
JBris/k8s-r-demo
Quick demonstration of using R with Kubernetes
JBris/kedro-testing
Testing Kedro
JBris/likelihood_free_hyperpriors_test
Testing out hyper-priors for likelihood-free methods
JBris/linkml-pydantic-polyfactory
Testing LinkML for generating Pydantic data models alongside polyfactory for mock data.
JBris/mqtt-docker-python
Testing MQTT using Docker and the Paho Python client
JBris/openmetadata-helm-argocd
Test deployment of OpenMetadata via Helm and ArgoCD
JBris/pcse
Repository for the Python Crop Simulation Environment
JBris/pydantic-fastapi-graphql
Testing Pydantic, FastAPI, polyfactory, pandera and GraphQL with SQLModel and pydantic-mongo
JBris/redis-streams-python
Testing out Redis Streams using Python client
JBris/seldon-testing
Testing MLServer and Alibi
JBris/wofost-calibration-dashboard
Plotly Dashboard for calibrating WOFOST 7.2
JBris/zenml-testing
Testing ZenML
JBris/zero-inflated-gaussian-processes
Latent gaussian processes for zero inflated count data.
JBris/abcpy
ABCpy package
JBris/calisim
This repository contains various methods for calibrating simulation models.
JBris/curlew
Geological models with neural fields
JBris/elfi
ELFI - Engine for Likelihood-Free Inference
JBris/obsidian-releases
Community plugins list, theme list, and releases of Obsidian.
JBris/TEgenomeSimulator
TEgenomeSimulator: A tool to simulate TE mutation and insertion into a random-synthesised or user-provided genome.
JBris/torchvista
Interactive Pytorch forward pass visualization in notebooks