JBris

fastapi-react-graphql

Example of a simple FastAPI and React app using GraphQL

model-calibration-evaluation

Evaluating model calibration methods for sensitivity analysis, uncertainty analysis, optimisation, and Bayesian inference

multivariate_analysis_examples

Several examples of multivariate techniques implemented in R, Python, and SAS. Multivariate concrete dataset retrieved from https://archive.ics.uci.edu/ml/datasets/Concrete+Slump+Test. Credit to Professor I-Cheng Yeh.

nextflow-graph-machine-learning

A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.

prefect-surrogate-models

Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.

react-typescript-graphql

A simple search tool to retrieve git repo information from GitHub, GitLab, and Bitbucket. Uses TypeScript and GraphQL for server-side API searches, and React.js for client-side rendering.

stan-cmdstanr-docker

A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling

time_series_anomaly_detection_examples

Several examples of anomaly detection algorithms for time series data.

vue-python-graphql

A simple search tool to retrieve git repo information from GitHub, GitLab, and Bitbucket. Uses aiohttp and Graphene for server-side API searches, and Vue.js for client-side rendering.

calisim

A toolbox for the calibration and evaluation of simulation models.

JBris/multivariate_analysis_examples

Several examples of multivariate techniques implemented in R, Python, and SAS. Multivariate concrete dataset retrieved from https://archive.ics.uci.edu/ml/datasets/Concrete+Slump+Test. Credit to Professor I-Cheng Yeh.

JBris/stan-cmdstanr-docker

A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling

JBris/time_series_anomaly_detection_examples

Several examples of anomaly detection algorithms for time series data.

JBris/fastapi-react-graphql

Example of a simple FastAPI and React app using GraphQL

JBris/nextflow-graph-machine-learning

A Nextflow pipeline demonstrating how to train graph neural networks for gene regulatory network reconstruction using DREAM5 data.

JBris/prefect-surrogate-models

Demonstrating the use of Prefect to orchestrate the creation of machine learning surrogate models as applied to mechanistic crop models.

JBris/stan-cmdstanr-gpu-docker

A Docker image to run Stan, cmdstanr, and brms for Bayesian statistical modelling. GPU support using OpenCL is available.

JBris/deep-root-gen

A simulation model for the digital reconstruction of 3D root system architectures. Integrated with a simulation-based inference generative deep learning model.

JBris/openmetadata-test

Testing a Docker deployment of OpenMetadata for S3 data ingestion

JBris/dagster-dbt-openmetadata-docker

Docker deployment of Dagster, DBT, and OpenMetadata

JBris/fastapi_background

JBris/jackson-data-models-example

Demonstration of Jackson data models

JBris/sbi-epidemiology

Simulation based inference for epidemiology

JBris/wofost-data-assimilation

JBris/aws-botorch-torchx-nas

Testing submission of AWS batch jobs using BoTorch (via Ax) and TorchX for neural architecture search

JBris/aws-crew-r

Testing submission of AWS batch jobs using the crew package in R

JBris/aws-ray-cluster

Testing deployment of a Ray cluster on AWS

JBris/beast2-docker

Docker and Apptainer setup for the BEAST 2 software

JBris/beast2-experiments

Experiments with the BEAST 2 software

JBris/datahub-test

Testing a Docker deployment of DataHub for S3 data ingestion

JBris/keycloak-flask-auth

Testing Keycloak authentication with a Flask web app

JBris/mage_ai_docker

Docker image for Mage AI deployment using Docker

JBris/marquez-test

Testing a Docker deployment of Marquez and OpenLineage

JBris/r-starter-template

JBris/APSIM.HPC

JBris/bioinformatics-dockerfiles

This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.

JBris/epigrass-experiments

Experimenting with the Epigrass package

JBris/FieldNBalance

Nitrogen balance model components and test procedures

JBris/Grapevine_Botrytis_disease_model

JBris/pcse_notebooks

A collection of Jupyter notebooks that demonstrate usage of PCSE