JFsanchezherrero/BacDup

Set NCBI download

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Set the appropiate code to download one or many GenBank IDs provided

Use python package ncbi-genome-download
https://pypi.org/project/ncbi-genome-download/

I did something similar but not quite the same using: edirect. See code examples in BacterialTyper:
https://github.com/HCGB-IGTP/BacterialTyper/blob/master/BacterialTyper/scripts/edirect_caller.py

Ideally, we should manage to do something that uses both packages and allows to retreive: the first 100 complete genomes, from Staphylococcus aures. See intention in:
https://github.com/HCGB-IGTP/BacterialTyper/blob/master/BacterialTyper/scripts/get_descendant.py