JING-XINXING

JING-XINXING's Stars

• shiroinekotfs/jupyter-cpp-kernel

  C++ kernel for Jupyter. Easily adopt and deploy for testing environment.

  Language:C++273

• termux/termux-app

  Termux - a terminal emulator application for Android OS extendible by variety of packages.

  Language:Java36.9k3.9k

• jupyter-xeus/xeus-cling

  Jupyter kernel for the C++ programming language

  Language:C++3.1k302

• Coder-Spirit/Jupyter-PHP-Installer

  An installer for Jupyter-PHP

  Language:PHP4420

• rbenv/rbenv

  Manage your app's Ruby environment

  Language:Shell16.1k1.4k

• SciRuby/iruby

  Official gem repository: Ruby kernel for Jupyter/IPython Notebook

  Language:Ruby90129

• nanoporetech/megalodon

  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

  Language:Python19730

• wdecoster/nanostat

  Create statistic summary of an Oxford Nanopore read dataset

  Language:Python9411

• GaetanBenoitDev/metaMDBG

  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

  Language:C++1104

• esteinig/nanoq

  Minimal but speedy quality control for nanopore reads in Rust :bear:

  Language:Rust12510

• a-slide/pycoQC

  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

  Language:Python27241

• tseemann/shovill

  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

  Language:Perl21445

• friend1ws/nanomonsv

  SV detection tool for nanopore sequence reads

  Language:Python8912

• wdecoster/nanocomp

  Comparison of multiple long read datasets

  Language:Python1099

• vibansal/HapCUT2

  software tools for haplotype assembly from sequence data

  Language:C20836

• walaj/svaba

  Structural variation and indel detection by local assembly

  Language:C++23745

• Daniel-Liu-c0deb0t/UMICollapse

  Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

  Language:Java648

• tangerzhang/ALLHiC

  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

  Language:Perl17439

• GenomeRIK/tama

  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)

  Language:Python12925

• wdecoster/nanofilt

  Filtering and trimming of long read sequencing data

  Language:Python18914

• gatk-workflows/gatk4-germline-snps-indels

  Workflows for germline short variant discovery with GATK4

  Language:wdl13356

• PacificBiosciences/HiFi-16S-workflow

  Nextflow pipeline to analyze PacBio HiFi full-length 16S data

  Language:Nextflow6416

• Trinotate/Trinotate

  Trinotate source code

  Language:JavaScript7836

• PacificBiosciences/pb-CpG-tools

  Collection of tools for the analysis of CpG data

  746

• epi2me-labs/pychopper

  cDNA read preprocessing

  Language:Python619

• SciLifeLab/TIDDIT

  TIDDIT - structural variant calling

  Language:Cython6913

• ImperialCardioGenetics/UTRannotator

  VEP Plugin to annotate high-impact five prime UTR variants

  Language:HTML254

• PacificBiosciences/MethBat

  A battery of methylation tools for PacBio HiFi reads

  281

• guigolab/bamstats

  A command line tool to compute mapping statistics from a BAM file

  Language:Go224

• nf-core/fastquorum

  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

  Language:Nextflow2010