Pinned Repositories
ATAC_Seq_TCell_Downstream_Analysis
Repository hosting the code used to perform TCell ATAC-seq analysis after OPN5 treatment to alleviate TCell exhaustion.
bsseq-nf
A Nextflow pipeline for the end-to-end data processing of Bisulfite Sequencing (BS-seq) paired-end data.
chipseq-nf
An end-to-end pipeline for the processing of ChIP-seq data.
CRUSH
The home for the HiCrush fine-scale Hi-C compartment calling algorithm.
hdpairing
hd pairing script that examines the orientation of "self" ligations
HiCNoiseMeasurer
HiCrayon
Web-Application for the cross-visualization of HiC and ChIP-seq data.
HiCSampler
OldEigen
UNMC_ATACseq_Tutorial
An open-source interactive pipeline tutorial for differential ATAC-seq footprint analysis
JRowleyLab's Repositories
JRowleyLab/HiCrayon
Web-Application for the cross-visualization of HiC and ChIP-seq data.
JRowleyLab/UNMC_ATACseq_Tutorial
An open-source interactive pipeline tutorial for differential ATAC-seq footprint analysis
JRowleyLab/HiCSampler
JRowleyLab/CRUSH
The home for the HiCrush fine-scale Hi-C compartment calling algorithm.
JRowleyLab/HiCNoiseMeasurer
JRowleyLab/ATAC_Seq_TCell_Downstream_Analysis
Repository hosting the code used to perform TCell ATAC-seq analysis after OPN5 treatment to alleviate TCell exhaustion.
JRowleyLab/bsseq-nf
A Nextflow pipeline for the end-to-end data processing of Bisulfite Sequencing (BS-seq) paired-end data.
JRowleyLab/chipseq-nf
An end-to-end pipeline for the processing of ChIP-seq data.
JRowleyLab/hdpairing
hd pairing script that examines the orientation of "self" ligations
JRowleyLab/OldEigen
JRowleyLab/POSSUM
R functions for very fast eigenvector calculation
JRowleyLab/rnaseq-nf
Basic RNA-seq data processing pipeline written in Nextflow.
JRowleyLab/SIP
JRowleyLab/SIPMeta
JRowleyLab/JupyterDropDownQuizzes
Create matching-type quizzes in jupyter notebooks, with options to include distractors, randomization, and/or provide instant feedback.