Pinned Repositories
tev-server
Repository for tumor evolution visualization back end.
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
UpSetR-shiny
A Shiny wrapper for the UpSetR R package (https://github.com/hms-dbmi/UpSetR).
ClinPlots
R package to create clinico-genomic charts
fastQCvis
New visualizations for fastQC files
JakeConway.github.io
upset
UpSet - Visualizing Intersecting Sets
JakeConway's Repositories
JakeConway/ClinPlots
R package to create clinico-genomic charts
JakeConway/JakeConway.github.io
JakeConway/upset
UpSet - Visualizing Intersecting Sets
JakeConway/fastQCvis
New visualizations for fastQC files
JakeConway/3dbarplot
A 3D barplot script for R. Can encode variables using both height and depth of columns.
JakeConway/biostats_r_code
Repo for R code for my class
JakeConway/cs181-demos
IPython demos for CS181
JakeConway/deconstructSigs
deconstructSigs
JakeConway/expands
Expanding Ploidy and Allele Frequency on Nested Subpopulations (expands) characterizes coexisting subpopulations in a single tumor sample using copy number and allele frequencies derived from exome- or whole genome sequencing input data.
JakeConway/FoundationToFHIR
JakeConway/FoundationToFHIRjs
JakeConway/FoundationToFHIRpy
JakeConway/hif2gene
JakeConway/mstknnclust
:exclamation: This is a read-only mirror of the CRAN R package repository. mstknnclust — MST-kNN Clustering Algorithm
JakeConway/PCM-survival
JakeConway/SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
JakeConway/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs
JakeConway/TensorFlow-Tutorials
TensorFlow Tutorials with YouTube Videos