Harvard Medical School - Department of Biomedical Informatics

Boston

Pinned Repositories

3d-genome-processing-tutorial
A 3D genome data processing tutorial for ISMB/ECCB 2017
Language:Jupyter Notebook51 12 010
CHIEF
Clinical Histopathology Imaging Evaluation Foundation Model
Language:Python674 14 49107
chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript70 3 887
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Language:Jupyter Notebook204 24 249
MOMA
MOMA
Language:Python53 4 512
scde
R package for analyzing single-cell RNA-seq data
Language:R176 22 8266
spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Language:C++43 8 2322
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Language:R810 36 234162
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript325 13 28854
vizarr
A minimal Zarr image viewer based on Viv.
Language:TypeScript166 8 6533

Harvard Medical School - Department of Biomedical Informatics's Repositories

hms-dbmi/chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript70 3 887
hms-dbmi/gehlenborglab-website
Code for HIDIVE Lab website.
Language:TypeScript10 12 22141
hms-dbmi/zod-ome-ngff
zod schemas for ome-ngff
Language:TypeScript81
hms-dbmi/pic-sure
PIC-SURE API
Language:Java6 12 13
hms-dbmi/avillachlab-jenkins
Language:HCL5 13 16
hms-dbmi/pic-sure-bdc-infrastructure
Language:HCL5 10 01
hms-dbmi/hypatio-app
Language:Python4 8 01
hms-dbmi/pic-sure-all-in-one
Language:Shell4 19 512
hms-dbmi/pic-sure-auth-microapp
Language:Java4 17 15
hms-dbmi/pic-sure-hpds
Language:Java3 18 06
hms-dbmi/uchimata
Library for visualizing three-dimensional genome models and associated genomics data
Language:TypeScript3
hms-dbmi/dbmi-fileservice
Language:Python2 7 00
hms-dbmi/i2b2v2-webclient
Language:JavaScript2 5 25
hms-dbmi/pic-sure-metadata-curation
Parse and generate variable-level data to be exposed through the search interface.
Language:SAS2 10 02
hms-dbmi/biodata_catalyst_stigmatizing_variables
Language:Jupyter Notebook1 10 00
hms-dbmi/dbmisvc-starter
Language:Python1 4 0
hms-dbmi/pic-sure-bdc-release-control
1 8 08
hms-dbmi/PIC-SURE-Frontend
A frontend for the PIC-SURE API
Language:TypeScript1 6 20
hms-dbmi/pic-sure-gic-institution-frontend
Language:JavaScript1 11 01
hms-dbmi/picsure-dictionary-etl
Language:Java1 6 0
hms-dbmi/scellop
Cell Population Viewer
Language:TypeScript11
hms-dbmi/uchimata-py
Visualization of 3D genome models in notebooks
Language:Python1
hms-dbmi/ETLToolSuite-EntityGenerator
This tool will generate Entity Files that can be used to load into Datasources.
Language:Java0 8 01
hms-dbmi/picsure-dictionary
Language:Java0 0 00
hms-dbmi/avillachlab-jenkins-bdc-etl
Language:Shell7 0
hms-dbmi/keyboard-accessibility-evaluation
Evaluation of keyboard accessibility of visualization tools
Language:Jupyter Notebook
hms-dbmi/pic-sure-baseline-release-control
18 05
hms-dbmi/pic-sure-gic-common-frontend
Language:Java15 03
hms-dbmi/pic-sure-gic-common-release-control
12 01
hms-dbmi/pic-sure-gic-institution-release-control
10 01