Harvard Medical School - Department of Biomedical Informatics

Boston

Pinned Repositories

3d-genome-processing-tutorial
A 3D genome data processing tutorial for ISMB/ECCB 2017
Language:Jupyter Notebook50 14 010
CHIEF
Clinical Histopathology Imaging Evaluation Foundation Model
Language:Python499 9 3374
chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript66 4 837
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Language:Jupyter Notebook193 26 249
MOMA
MOMA
Language:Python50 5 411
scde
R package for analyzing single-cell RNA-seq data
Language:R173 25 8266
spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Language:C++40 9 2322
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Language:R765 38 234158
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript290 14 27146
vizarr
A minimal Zarr image viewer based on Viv.
Language:TypeScript131 9 5418

Harvard Medical School - Department of Biomedical Informatics's Repositories

hms-dbmi/vizarr
A minimal Zarr image viewer based on Viv.
Language:TypeScript131 9 5418
hms-dbmi/chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript66 4 837
hms-dbmi/gehlenborglab-website
Code for Gehlenborg Lab website.
Language:HTML8 14 11338
hms-dbmi/Access-to-Data-using-PIC-SURE-API
Language:Jupyter Notebook6 29 08
hms-dbmi/avillachlab-jenkins
Language:HCL5 14 16
hms-dbmi/pic-sure
PIC-SURE API
Language:Java5 14 13
hms-dbmi/pic-sure-bdc-infrastructure
Language:HCL5 11 01
hms-dbmi/hypatio-app
Language:Python4 8 00
hms-dbmi/pic-sure-all-in-one
Language:Shell4 20 512
hms-dbmi/pic-sure-auth-microapp
Language:Java4 18 15
hms-dbmi/pic-sure-hpds
Language:Java3 18 06
hms-dbmi/dbmi-fileservice
Language:Python2 8 00
hms-dbmi/fhirquestionnaire
Language:HTML2 5 0
hms-dbmi/i2b2v2-webclient
Language:JavaScript2 5 24
hms-dbmi/pic-sure-metadata-curation
Parse and generate variable-level data to be exposed through the search interface.
Language:SAS2 10 02
hms-dbmi/biodata_catalyst_stigmatizing_variables
Language:Jupyter Notebook1 11 00
hms-dbmi/dbmisvc-starter
Language:Python1 4 0
hms-dbmi/pic-sure-bdc-release-control
1 10 08
hms-dbmi/PIC-SURE-Frontend
A frontend for the PIC-SURE API
Language:TypeScript1 6 20
hms-dbmi/pic-sure-hpds-phenotype-load-example
Language:Jupyter Notebook1 7 01
hms-dbmi/cellpop
Language:TypeScript0 3 111
hms-dbmi/avillachlab-jenkins-bdc-etl
Language:Shell7 0
hms-dbmi/DBMI-LZA-Dev
Deploy a multi-account cloud foundation to support highly-regulated workloads and complex compliance requirements.
Language:TypeScript
hms-dbmi/ETL-MissionControl-dbgap-submodule
ETL-MissionControl-dbgap-submodule
Language:Shell4 0
hms-dbmi/ETLToolSuite-EntityGenerator
This tool will generate Entity Files that can be used to load into Datasources.
Language:Java9 01
hms-dbmi/pic-sure-baseline-release-control
20 05
hms-dbmi/PIC-SURE-Migrations
Database migrations for the PIC-SURE All-in-One.
hms-dbmi/pic-sure-wildfly-docker
Language:Dockerfile14 01
hms-dbmi/picsure-dictionary
Language:Java0 0
hms-dbmi/picsure-dictionary-etl
Language:Java6 0