Harvard Medical School - Department of Biomedical Informatics

Boston

Pinned Repositories

3d-genome-processing-tutorial
A 3D genome data processing tutorial for ISMB/ECCB 2017
Language:Jupyter Notebook48 14 09
chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript58 4 834
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Language:Jupyter Notebook187 26 247
MOMA
MOMA
Language:Python41 4 410
scde
R package for analyzing single-cell RNA-seq data
Language:R171 25 8164
spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Language:C++36 9 2122
upset-altair-notebook
Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
Language:Jupyter Notebook27 5 43
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Language:R740 38 230147
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript261 14 26441
vizarr
A minimal Zarr image viewer based on Viv.
Language:TypeScript105 10 5216

Harvard Medical School - Department of Biomedical Informatics's Repositories

hms-dbmi/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript261 14 26441
hms-dbmi/chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript58 4 834
hms-dbmi/dseqr
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
Language:R20 8 1674
hms-dbmi/service-workbench-on-aws
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
Language:JavaScript7 3 03
hms-dbmi/gehlenborglab-website
Code for Gehlenborg Lab website.
Language:HTML6 15 8033
hms-dbmi/avillachlab-jenkins
Language:HCL5 14 16
hms-dbmi/pic-sure
PIC-SURE API
Language:Java5 14 13
hms-dbmi/pic-sure-bdc-infrastructure
Language:HCL5 11 01
hms-dbmi/hypatio-app
Language:Python4 8 00
hms-dbmi/pic-sure-all-in-one
Language:Shell4 20 512
hms-dbmi/pic-sure-auth-microapp
Language:Java4 18 14
hms-dbmi/pic-sure-hpds
Language:Java3 18 06
hms-dbmi/dbmi-fileservice
Language:Python2 8 00
hms-dbmi/fhirquestionnaire
Language:HTML2 5 0
hms-dbmi/i2b2v2-webclient
Language:JavaScript2 5 23
hms-dbmi/pic-sure-bdc-frontend
Language:JavaScript2 14 02
hms-dbmi/biodata_catalyst_stigmatizing_variables
Language:Jupyter Notebook1 11 0
hms-dbmi/GIC-ontology
13
hms-dbmi/pic-sure-bdc-release-control
1 11 08
hms-dbmi/pic-sure-core-frontend
Language:JavaScript1 17 12
hms-dbmi/PIC-SURE-Frontend
A frontend for the PIC-SURE API
Language:TypeScript1 6 0
hms-dbmi/pic-sure-metadata-curation
Parse and generate variable-level data to be exposed through the search interface.
Language:SAS1 10 02
hms-dbmi/pic-sure-python-adapter-hpds
A Python client library for PIC-SURE-HPDS resources
Language:Python1 19 01
hms-dbmi/Access-to-Data-and-Compute-using-Service-Workbench
Repository for Service Workbench example notebooks
Language:Jupyter Notebook2
hms-dbmi/actions
2 0
hms-dbmi/open-pic-sure-bdc-release-control
BDC Open Access without Login Release Control
1 0
hms-dbmi/pic-sure-baseline-frontend
Language:JavaScript19 04
hms-dbmi/pic-sure-baseline-release-control
20 05
hms-dbmi/pic-sure-wildfly-docker
Language:Dockerfile14 01
hms-dbmi/picsure-dictionary
Language:Java