Harvard Medical School - Department of Biomedical Informatics

Boston

Pinned Repositories

3d-genome-processing-tutorial
A 3D genome data processing tutorial for ISMB/ECCB 2017
Language:Jupyter Notebook50 13 010
CHIEF
Clinical Histopathology Imaging Evaluation Foundation Model
Language:Python655 15 49106
chromoscope
Interactive multiscale visualization for structural variation in human genomes
Language:TypeScript70 4 867
hic-data-analysis-bootcamp
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Language:Jupyter Notebook205 25 250
MOMA
MOMA
Language:Python53 5 412
scde
R package for analyzing single-cell RNA-seq data
Language:R176 23 8266
spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
Language:C++43 8 2322
UpSetR
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Language:R806 37 234162
viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript319 13 27851
vizarr
A minimal Zarr image viewer based on Viv.
Language:TypeScript162 8 5927

Harvard Medical School - Department of Biomedical Informatics's Repositories

hms-dbmi/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Language:JavaScript319 13 27851
hms-dbmi/vizarr
A minimal Zarr image viewer based on Viv.
Language:TypeScript162 8 5927
hms-dbmi/gehlenborglab-website
Code for HIDIVE Lab website.
Language:TypeScript10 12 22141
hms-dbmi/Access-to-Data-using-PIC-SURE-API
Language:Jupyter Notebook8 28 08
hms-dbmi/pic-sure
PIC-SURE API
Language:Java6 12 13
hms-dbmi/hypatio-app
Language:Python4 8 01
hms-dbmi/pic-sure-all-in-one
Language:Shell4 19 512
hms-dbmi/pic-sure-auth-microapp
Language:Java4 17 15
hms-dbmi/udi-grammar
The Universal Discovery Interface Grammar.
Language:TypeScript43
hms-dbmi/pic-sure-hpds
Language:Java3 18 06
hms-dbmi/dbmi-fileservice
Language:Python2 7 00
hms-dbmi/fhirquestionnaire
Language:HTML2 4 0
hms-dbmi/i2b2v2-webclient
Language:JavaScript2 5 25
hms-dbmi/uchimata
Library for visualizing three-dimensional genome models and associated genomics data
Language:TypeScript2
hms-dbmi/biodata_catalyst_stigmatizing_variables
Language:Jupyter Notebook1 11 00
hms-dbmi/dbmisvc-starter
Language:Python1 4 0
hms-dbmi/DQVis-review
For reviewing the generated datasets.
Language:Vue1 0 01
hms-dbmi/GIC-ontology
1 8 24
hms-dbmi/pic-sure-bdc-release-control
1 9 08
hms-dbmi/PIC-SURE-Frontend
A frontend for the PIC-SURE API
Language:TypeScript1 6 20
hms-dbmi/uchimata-py
Visualization of 3D genome models in notebooks
Language:Python1
hms-dbmi/cellpop
Language:TypeScript0 3 131
hms-dbmi/picsure-dictionary
Language:Java0 0 00
hms-dbmi/avillachlab-jenkins-bdc-etl
Language:Shell7 0
hms-dbmi/GQVis-review
For reviewing the generated genomics datasets.
hms-dbmi/pic-sure-gic-institution-release-control
11 01
hms-dbmi/PIC-SURE-Migrations
Database migrations for the PIC-SURE All-in-One.
hms-dbmi/pic-sure-services
Language:Java19 0
hms-dbmi/picsure-dictionary-etl
Language:Java6 0
hms-dbmi/udi-chat
For experimenting with chat based interface for the Universal Discovery Interface.
Language:Vue