/viral-protein-analyzer

A library of functions with the goal of mapping nucleotide-containing FASTA files for protein encoding ORFs as well as a computational analytics research paper on said functions

Primary LanguageJupyter NotebookGNU General Public License v3.0GPL-3.0

ViralProteinAnalyzer

Thank you to @syclops for the helper functions used.

Folder RelevantBLASTQueries contains protein-BLAST search queries mentioned in proteinpaper.ipynb

helpers.py contains helper functions used by gene_finder.py

gene_finder.py contains functions used to analyze viral genome for protein encoding ORFs

proteinpaper.ipynb contains computational research paper on this project (START HERE)