JervenBolleman/FALDO-paper

Issues

• Position position

  #26 opened 11 years ago by JervenBolleman
  5

• Figure 8 and 9 use faldo:ExactlyKnownPosition instead of ExactPosition

  #30 opened 9 years ago by JervenBolleman
  0

• Alternative formats/content negotation

  #28 opened 9 years ago by JervenBolleman
  1

• Relation of Vario to Faldo

  #27 opened 11 years ago by JervenBolleman
  1

• Address circular genomes

  #3 opened 11 years ago by cmungall
  3

• Switch to licence CC-BY 4.0?

  #23 opened 11 years ago by peterjc
  3

• (new) Figure 1: The classes and object properties used in FALDO

  #24 opened 11 years ago by peterjc
  3

• JBrowse screenshot as new Figure?

  #12 opened 11 years ago by peterjc
  4

• Visual diagrams to supplement the (text only) examples?

  #14 opened 11 years ago by peterjc
  1

• Claiming to handle all biological uses cases

  #11 opened 11 years ago by peterjc
  5

• Cite 1st and 2nd BioHackathon papers too?

  #22 opened 11 years ago by peterjc
  2

• Figure 5: property chain

  #7 opened 11 years ago by cmungall
  1

• Make clearer that we talk about database record when using the word sequence.

  #15 opened 11 years ago by JervenBolleman
  1

• Details for BioPerl's FALDO exporter

  #13 opened 11 years ago by peterjc
  2

• Figure 1 changes

  #16 opened 11 years ago by cmungall
  2

• inverse properties

  #17 opened 11 years ago by cmungall
  1

• Genome Variation Format (GVF)

  #10 opened 11 years ago by peterjc
  2

• Title: should it include FALDO?

  #8 opened 11 years ago by JervenBolleman
  2

• ENA vs EMBL-Bank

  #9 opened 11 years ago by peterjc
  1

• Trans-splicing example

  #4 opened 11 years ago by cmungall
  1

• Write paragraphs for main paper

  #2 opened 12 years ago by JervenBolleman
  4

• Split locations.tex into multiple text files one per section

  #1 opened 12 years ago by JervenBolleman
  2