Pinned Repositories
FALDO-paper
Glycan.rdf
Glycan database standardisation effort (superseded draft see GlycoRDF)
handlegraph4j
Handlegraph API in java for working with variation graph genome data.
handlegraph4j-simple
Simple implementation of an in memory handlegraph in java for testing purposes
handlegraph4jGFA
Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.
handlegraph4jRDF
Handlegraph RDF writers in java for working with variation graph genome data.
sapfhir
Join genomic variation graphs with public data or internal medical data e.g. FHIR. by having a FAIR data access, using W3C sparql as a standard protocol.
sesame-loader
Loads data into an sesame repository using multiple threads per file without any server over head.
sparql-identifiers
virtual sparql store for use by identifiers.org to convert URI patterns from one into an other. For use in federated queries.
FALDO
Feature Annotation Location Description Ontology
JervenBolleman's Repositories
JervenBolleman/sparql-identifiers
virtual sparql store for use by identifiers.org to convert URI patterns from one into an other. For use in federated queries.
JervenBolleman/r2s2
An experiment in taking random rdf and getting an "optimized" sparql endpoint based on sql (duckdb)
JervenBolleman/void-generator
Calculate statistics for use in a Service Description or Void file
JervenBolleman/handlegraph4jRDF
Handlegraph RDF writers in java for working with variation graph genome data.
JervenBolleman/sapfhir
Join genomic variation graphs with public data or internal medical data e.g. FHIR. by having a FAIR data access, using W3C sparql as a standard protocol.
JervenBolleman/handlegraph4j
Handlegraph API in java for working with variation graph genome data.
JervenBolleman/handlegraph4jGFA
Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.
JervenBolleman/rdflib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
JervenBolleman/virtuoso-opensource
Virtuoso is a scalable cross-platform server that combines Relational, Graph, and Document Data Management with Web Application Server and Web Services Platform functionality.
JervenBolleman/wikibase-sparql-examples
SPARQL examples extracted from wikibase instances
JervenBolleman/handlegraph4j-simple
Simple implementation of an in memory handlegraph in java for testing purposes
JervenBolleman/2024-hack4-hack8
SWAT4HCLS Biohackathon 2024 report: Beyond the Void & AI Prompt engineering for SPARQL
JervenBolleman/bh23-glyco
JervenBolleman/bh23-sparql4fhir
JervenBolleman/fdp-specs.github.io
Repository to host the documents related to the specifications of the FAIR Data Point.
JervenBolleman/fsst
Fast Static Symbol Table (FSST): efficient random-access string compression
JervenBolleman/fsst4j
Java bindings for fsst
JervenBolleman/JervenBolleman.github.io
Personal website
JervenBolleman/oxigraph
SPARQL graph database
JervenBolleman/Paxtools
The BioPAX Object Model, API and utilities implemented in Java
JervenBolleman/qlever
Very fast SPARQL Engine, which can handle very large knowledge graphs like the complete Wikidata, offers context-sensitive autocompletion for SPARQL queries, and allows combination with text search. It's faster than engines like Blazegraph or Virtuoso, especially for queries involving large result sets.
JervenBolleman/rdf-config
Describe RDF model and automatically generate SPARQL queries, schema chart, TogoStanza etc.
JervenBolleman/rdf-xml
JervenBolleman/rdf4j
Eclipse RDF4J is a powerful Java framework for working with RDF data. It includes streaming parsers and writers, scalable databases, SPARQL 1.1 and SHACL support, and developer-friendly APIs for accessing and modifying RDF models.
JervenBolleman/sapfhir-cli
A CLI tool to query GFA1 files with SPARQL
JervenBolleman/sapfhir-server
Server/docker image for sapfhir using spring-boot and docker image
JervenBolleman/scholia
Wikidata-based scholarly profiles
JervenBolleman/sparql-examples
A set of SPARQL examples that are used in different SIB resources
JervenBolleman/SWAT4HCLS-2024-beyond-the-void
SWAT4HCLS beyond the VoID hackathon project report
JervenBolleman/uniprot-manual