Pinned Repositories
Glycan.rdf
Glycan database standardisation effort (superseded draft see GlycoRDF)
handlegraph4j
Handlegraph API in java for working with variation graph genome data.
handlegraph4j-simple
Simple implementation of an in memory handlegraph in java for testing purposes
handlegraph4jGFA
Handlegraph based GFA(1+2) parsers in java for working with variation graph genome data.
handlegraph4jRDF
Handlegraph RDF writers in java for working with variation graph genome data.
sapfhir
Join genomic variation graphs with public data or internal medical data e.g. FHIR. by having a FAIR data access, using W3C sparql as a standard protocol.
sesame-loader
Loads data into an sesame repository using multiple threads per file without any server over head.
sparql-identifiers
virtual sparql store for use by identifiers.org to convert URI patterns from one into an other. For use in federated queries.
void-generator
Calculate statistics for use in a Service Description or Void file
FALDO
Feature Annotation Location Description Ontology
JervenBolleman's Repositories
JervenBolleman/Glycan.rdf
Glycan database standardisation effort (superseded draft see GlycoRDF)
JervenBolleman/FALDO-paper
JervenBolleman/HCLSDatasetDescriptions
JervenBolleman/HCLSValidator
Validator for HCLS dataset descriptions
JervenBolleman/lodestar
Linked Data explorer and SPARQL endpoint
JervenBolleman/owlim-shim
A fake OWLIM jar generater implementing some public interfaces allowing code to compile without depending on breaking the Ontotext licenses.
JervenBolleman/R2RDF
Converting R Objects to RDF Triples
JervenBolleman/rdfsummit
RDF summit for life science
JervenBolleman/spin
The TopBraid SPIN library
JervenBolleman/yasgui
Yet another SPARQL GUI
JervenBolleman/bigdata
Maven packaged version of BigData targeted for use with Java7
JervenBolleman/hashpan
Hashpan: A Clover Challenge
JervenBolleman/ant-ivy
Mirror of Apache Ant Ivy
JervenBolleman/bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
JervenBolleman/bioruby-table
TODO: one-line summary of your gem
JervenBolleman/compression_benchmark
Scripts to benchmark data compression, and plot the results
JervenBolleman/fastahack
utilities for indexing and sequence extraction from FASTA files
JervenBolleman/htslib
C library for high-throughput sequencing data formats
JervenBolleman/INSDC
INSDC Ontology