JhuangLab
Biomedical data analysis tools developed in Jinyan Huang Bioinformatics Lab.
Shanghai, China
Pinned Repositories
BioInstaller
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
BioInstaller-docker-repo
Docker image repo
CytoTree
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
ewas
EWASpaper
Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing
healthman
code for "A comparative cohort study of post-COVID-19 conditions based on 23,838 individuals’ physical examination records in China"
IMCpaper
Scripts for IMCpaper
iseq
An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
ngstk
A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
qap
quasispecies analysis package
JhuangLab's Repositories
JhuangLab/BioInstaller
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
JhuangLab/CytoTree
A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
JhuangLab/ngstk
A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
JhuangLab/iseq
An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
JhuangLab/EWASpaper
Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing
JhuangLab/BioInstaller-docker-repo
Docker image repo
JhuangLab/configr
JhuangLab/CytoTree-dataset
Datasets and code for CytoTree
JhuangLab/ewas
JhuangLab/flowSpy-dataset
Dataset of flowSpy
JhuangLab/GSEA-MSigDB
GSEA-MSigDB
JhuangLab/healthman
code for "A comparative cohort study of post-COVID-19 conditions based on 23,838 individuals’ physical examination records in China"
JhuangLab/hyperion
A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data
JhuangLab/IMCpaper
Scripts for IMCpaper
JhuangLab/qap
quasispecies analysis package
JhuangLab/delfi_scripts
JhuangLab/gvmap
JhuangLab/imctoolkits
A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data