JoachimGoedhart

JoachimGoedhart's Stars

• Peldom/papers_for_protein_design_using_DL

  List of papers about Proteins Design using Deep Learning

  1.4k1131172

• rasbt/watermark

  An IPython magic extension for printing date and time stamps, version numbers, and hardware information

  Language:Python890134691

• HenriquesLab/ZeroCostDL4Mic

  ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

  Language:Jupyter Notebook55934213129

• computational-cell-analytics/micro-sam

  Segment Anything for Microscopy

  Language:Jupyter Notebook358721343

• universvm/how_to_create_a_protein

  A short course on proteins and protein design aimed at early career students

  138316

• haesleinhuepf/bia-bob

  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

  Language:Python9261006

• WhoIsJack/python-bioimage-analysis-tutorial

  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.

  Language:Jupyter Notebook913338

• gchure/reproducible_research

  A template repository for how I structure my scientific research

  Language:Python905121

• HenriquesLab/DL4MicEverywhere

  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images

  Language:Jupyter Notebook6861810

• guiwitz/neubias_academy_biapy

  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

  Language:Jupyter Notebook624136

• segment-anything-models-java/SAMJ-IJ

  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.

  Language:Java517185

• CellMigrationLab/CellTracksColab

  A platform for compiling, analyzing, and exploring tracking data

  Language:Jupyter Notebook412184

• jennybc/analyze-github-stuff-with-r

  Marshal data from the GitHub API with R

  Language:R39425

• oanegros/Blender_for_Biologists_2023

  Language:Python36262

• alperezq/FancyPubFigures

  R scripts to generate publication summary figures

  22314

• ariel-waisman/LabelsToROIs

  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification

  Language:Python212229

• LaboratoryOpticsBiosciences/FLUTE

  Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data

  Language:Python20435

• CamachoDejay/teaching-bioimage-analysis-python

  A place to collect information used in lectures, demos, workshops, etc.

  Language:Jupyter Notebook17403

• doehm/evoPalette

  Evolve new colour palettes

  Language:R15410

• computational-cell-analytics/dl-for-micro

  Course and exercises on deep learning for microscopy image analysis

  Language:Jupyter Notebook13440

• LIBREhub/napari-LatAm-workshop-2023

  Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers

  Language:Shell10445

• wentingliu/ScreenPicker

  Language:Objective-C9116

• paulcbauer/Writing_a_reproducable_paper_in_pagedown

  This repository contains files to write a reproducibly paper in pagedown.

  Language:HTML8202

• UU-cellbiology/PTU_Reader

  ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files

  Language:Java6411

• atamaianalytics/DimensionReduction

  Shiny app for dimension reduction using UMAP and t-SNE

  Language:R4102

• maurosilber/pawflim

  Wavelet denoising of phasors.

  Language:Python3100

• Mariochem92/PhasorIdentifier

  Analyze FLIM files (.R64, .ref) effortlessly. Masking, cell segmentation, pH correlation, nanoscale effects, and precise quantification. Versatile for various research scenarios.

  Language:Jupyter Notebook2

• mutterer/stellaris

  Language:ImageJ Macro2301

• dmattek/shiny-scholar-navi

  R/Shiny app to browse and visualise Google Scholar data

  Language:R1100

• WillGiang/willgiang.github.io

  Language:Jupyter Notebook1100