JoachimGoedhart's Stars
Peldom/papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
rasbt/watermark
An IPython magic extension for printing date and time stamps, version numbers, and hardware information
HenriquesLab/ZeroCostDL4Mic
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
computational-cell-analytics/micro-sam
Segment Anything for Microscopy
universvm/how_to_create_a_protein
A short course on proteins and protein design aimed at early career students
haesleinhuepf/bia-bob
BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
WhoIsJack/python-bioimage-analysis-tutorial
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
gchure/reproducible_research
A template repository for how I structure my scientific research
HenriquesLab/DL4MicEverywhere
Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
guiwitz/neubias_academy_biapy
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
segment-anything-models-java/SAMJ-IJ
An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
CellMigrationLab/CellTracksColab
A platform for compiling, analyzing, and exploring tracking data
jennybc/analyze-github-stuff-with-r
Marshal data from the GitHub API with R
oanegros/Blender_for_Biologists_2023
alperezq/FancyPubFigures
R scripts to generate publication summary figures
ariel-waisman/LabelsToROIs
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
LaboratoryOpticsBiosciences/FLUTE
Fluorescence Lifetime Ultimate Explorer (FLUTE) is a GUI for exploring and analyzing Fluorescence Lifetime Microscopy (FLIM) data
CamachoDejay/teaching-bioimage-analysis-python
A place to collect information used in lectures, demos, workshops, etc.
doehm/evoPalette
Evolve new colour palettes
computational-cell-analytics/dl-for-micro
Course and exercises on deep learning for microscopy image analysis
LIBREhub/napari-LatAm-workshop-2023
Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers
wentingliu/ScreenPicker
paulcbauer/Writing_a_reproducable_paper_in_pagedown
This repository contains files to write a reproducibly paper in pagedown.
UU-cellbiology/PTU_Reader
ImageJ plugin reading PicoQuant ptu/pt3 FLIM image files
atamaianalytics/DimensionReduction
Shiny app for dimension reduction using UMAP and t-SNE
maurosilber/pawflim
Wavelet denoising of phasors.
Mariochem92/PhasorIdentifier
Analyze FLIM files (.R64, .ref) effortlessly. Masking, cell segmentation, pH correlation, nanoscale effects, and precise quantification. Versatile for various research scenarios.
mutterer/stellaris
dmattek/shiny-scholar-navi
R/Shiny app to browse and visualise Google Scholar data
WillGiang/willgiang.github.io