JohnCEarls
Computer Science PhD student at the University of Washington under the Nathan Price Lab at the Institute for Systems Biology.
Institute for Systems BiologySeattle
Pinned Repositories
Adaptive-Dirac
Dirac built using protein protein interaction networks
AUREA
AUREA: Adaptive Unified Relative Expression Analyser
AUREANebula
AUREA Nebula
DataDirac
MasterDirac
Master server controlling GPUDirac and DataDirac
pyBabel
A python version of http://search.cpan.org/~phonybone/Data-Babel-Client-0.01/
StarCluster
StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).
tcDirac
Time course network analysis of transcriptomic data
JohnCEarls's Repositories
JohnCEarls/tcDirac
Time course network analysis of transcriptomic data
JohnCEarls/Adaptive-Dirac
Dirac built using protein protein interaction networks
JohnCEarls/AUREA
AUREA: Adaptive Unified Relative Expression Analyser
JohnCEarls/AUREANebula
AUREA Nebula
JohnCEarls/DataDirac
JohnCEarls/MasterDirac
Master server controlling GPUDirac and DataDirac
JohnCEarls/pyBabel
A python version of http://search.cpan.org/~phonybone/Data-Babel-Client-0.01/
JohnCEarls/StarCluster
StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).
JohnCEarls/starcluster-plugins
collection of my starcluster plugins
JohnCEarls/TSXCUDA
CUDA Implementations of tsp
JohnCEarls/AN-snapr
JohnCEarls/ANstartupScripts
Bootstrap scripts for AUREANebula
JohnCEarls/basespace-snapr
JohnCEarls/data-bin
JohnCEarls/DataCluster
Cluster GEO metadb
JohnCEarls/delorean
Delorean: Time Travel Made Easy
JohnCEarls/EVAandGSEAwrappers
JohnCEarls/examples
A collection of examples introducing to Nextflow scripting
JohnCEarls/GPUDirac
code for a GPUDirac server
JohnCEarls/ipynotebooks
JohnCEarls/java_tst
JohnCEarls/machine-learning-specialization
JohnCEarls/pyCTD
A python interface to the connect the dots web application
JohnCEarls/PynamoDB
A pythonic interface to Amazon's DynamoDB
JohnCEarls/rapid-web
Rapid Web Prototyping with Lightweight Tools (code that goes with the slides)
JohnCEarls/raven-aws-emr-spark-jupyter
Running Jupyter and pySpark on an Apache Spark Cluster on Elastic MapReduce (Amazon EMR)
JohnCEarls/svg-crowbar
Extracts an SVG node and accompanying styles from an HTML document and allows you to download it all as an SVG file.
JohnCEarls/tcdiracweb
JohnCEarls/trends
The global classification project
JohnCEarls/vimium
The hacker's browser.