Jonahowns
Chemistry PhD Student at Arizona State University specializing in Molecular Dynamics and Machine Learning. Member of the Sulc Lab (@sulcgroup).
Arizona State UniversityMesa, AZ
Pinned Repositories
clionsettings
settings for CLion
CRBM
Convolutional Restricted Boltzmann Machine
ENM_Protein
hanm
hanm_c
Rewrite of hanm code to work with my coarse grained networks
oxpy_anm
phage_display_ML
ML applied to phage display sequence data
PythonNetworks
Creation of a sampler for creating Coarse-Grain representations
oxdna-viewer
oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
Jonahowns's Repositories
Jonahowns/hanm_c
Rewrite of hanm code to work with my coarse grained networks
Jonahowns/oxpy_anm
Jonahowns/phage_display_ML
ML applied to phage display sequence data
Jonahowns/PythonNetworks
Creation of a sampler for creating Coarse-Grain representations
Jonahowns/clionsettings
settings for CLion
Jonahowns/CRBM
Convolutional Restricted Boltzmann Machine
Jonahowns/ENM_Protein
Jonahowns/hanm
Jonahowns/keras_extensions
A collection of small extensions to Keras (RBM, momentum schedule, ..)
Jonahowns/learnergy
💡 Learnergy is a Python library for energy-based machine learning models.
Jonahowns/ox-serve
Backend for driving oxDNA simulations from oxView.
Jonahowns/oxDNA-1
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
Jonahowns/oxdna-viewer
oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis
Jonahowns/oxdna_analysis_tools
A set of tools to analyze oxDNA/oxRNA simulations of DNA/RNA
Jonahowns/oxTorch_prototype
Jonahowns/pool_harmonium
Jonahowns/ProteinMotifRBM
Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox
Jonahowns/pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration
Jonahowns/pytorch-intro
Small collection of pytorch Models for aptamer sequence data
Jonahowns/TCR_Analysis
TCR_Data Analysis Python Scripts