sulcgroup/oxdna-viewer

Issues

• Tacox plugin: Sequence mismatches on multiple scaffold on random sequence

  #123 opened 3 months ago by elija-feigl
  0

• TacoxDNA importer dose not work

  #121 opened 6 months ago by atlan-yf
  1

• Saved Image is Blank When Scaling Factor > 5

  #119 opened a year ago by dhollis6
  2

• Orthographic camera issues

  #40 opened 4 years ago by Akodiat
  1

• OxView (web-version) really slow?

  #117 opened a year ago by Boyu-Liu03
  13

• Feature request: Make it possible to highlight "unpaired" nucleotides

  #84 opened a year ago by thenlevy
  4

• Patchy Topology File Parser Has Spaces Problem

  #105 opened a year ago by JeDeveloper
  0

• Just a quick fix for the overlays scales?

  #88 opened 2 years ago by simonecodispoti
  4

• `External forces` inconsistent with `Create from base pairs`

  #87 opened 2 years ago by RodenLuo
  3

• Feature request: UI shortcut for toggleBaseColors(), also option to change base colors from default grey

  #85 opened 2 years ago by dhollis6
  1

• Feature request: NickOrientation handles 1 or 2 nucleotides

  #86 opened 2 years ago by dhollis6
  1

• Extend in duplex mode makes the selected nucleotide a duplex

  #78 opened 2 years ago by mmguar
  1

• Weird interaction between api.toggleBaseColors() and the protein model

  #73 opened 3 years ago by ErikPoppleton
  0

• Scripting Interface Additions

  #33 opened 3 years ago by ErikPoppleton
  1

• How to switch off PBC while making movie?

  #67 opened 3 years ago by Prateek1410
  3

• Incompatibility between .dat and .top files when viewing the trajectory

  #68 opened 3 years ago by Prateek1410
  10

• No configuration shown

  #62 opened 3 years ago by ohenrich
  4

• PDB biological assembly support

  #63 opened 3 years ago by DurhamSmith
  2

• Improve error handling.

  #6 opened 3 years ago by zoombya
  0

• Questionson launching through command line and coordinate axis

  #56 opened 3 years ago by DurhamSmith
  6

• oxDNA export mac osx / safari

  #28 opened 3 years ago by JonathanBath
  2

• Select a strand in System Hierarchy does not highlight it anymore

  #52 opened 3 years ago by RodenLuo
  2

• Colouring nucleotides by index

  #24 opened 3 years ago by mckwxp
  7

• Uncaught TypeError: cannot read property "r" of undefined

  #30 opened 3 years ago by pepigomez95
  1

• Save colour palette

  #41 opened 3 years ago by Akodiat
  1

• findPair() is not restrictive enough in distance

  #46 opened 3 years ago by mmguar
  1

• Exported seqeunces appear to be backwards

  #18 opened 3 years ago by bensonbits
  5

• Synchronize Reader classes | introduce trajectory mode.

  #5 opened 3 years ago by zoombya
  0

• Build instructions

  #31 opened 4 years ago by DurhamSmith
  2

• Json overlay not working

  #26 opened 4 years ago by marlol4
  2

• Strand generator gives wrong pointing bases

  #25 opened 4 years ago by bensonbits
  2

• Topology and configuration file missmatch handling

  #7 opened 5 years ago by ErikPoppleton
  3

• Feature request - Adjust visibility/transparency for selections/clusters

  #20 opened 4 years ago by MishraS-S
  8

• Strands seem to be rendered at a fixed displaced position

  #23 opened 5 years ago by MishraS-S
  4

• Structures with different box sizes

  #21 opened 5 years ago by bensonbits
  4

• The highlight 5' end function seems like it isn't working.

  #22 opened 5 years ago by MishraS-S
  3

• Video exporting does not seem to work

  #19 opened 5 years ago by MishraS-S
  2

• Arrow direction in oxview

  #17 opened 5 years ago by bensonbits
  1

• Editing capabilities

  #8 opened 5 years ago by zoombya
  3

• camera settings: orthographic

  #16 opened 5 years ago by elija-feigl
  3

• I think the oxviewer is reading the box coordinates in the wrong order

  #15 opened 5 years ago by bensonbits
  2

• Interesting behavior of the selector.

  #10 opened 5 years ago by zoombya
  1

• Gif video making does not work

  #9 opened 5 years ago by ErikPoppleton
  2

• Picking scene desynchs if camera is moved frequently

  #14 opened 5 years ago by ErikPoppleton
  1

• Modify render hierarchy.

  #4 opened 5 years ago by zoombya
  1

• Camera motion for editing

  #11 opened 5 years ago by ErikPoppleton
  0

• Changing colors while bases are selected changes the color back to the default color, but keeps the selected bases list

  #12 opened 5 years ago by ErikPoppleton
  0

• Backbone connectors still update their material every frame of a trajectory.

  #13 opened 5 years ago by ErikPoppleton
  0

• The viewer does not support closed topologies

  #1 opened 6 years ago by lorenzo-rovigatti
  2