JonnyTran
Graph neural networks, bioinformatics, and ML engineering for all things NLP, RNA/protein sequence learning, and knowledge graphs. Work GH: @JTran-IDM
Actively lookingFort Worth, TX
Pinned Repositories
LATTE2GO
Protein function prediction by incorporating knowledge graph representation of heterogeneous interactions and Gene Ontology
lncrna-melanoma-immunoresponse
microRNA-Lung-Cancer-Associations
An association study to identify a robust miRNA biomarker signature at various stages of lung cancer.
ML-algorithms
Basic machine learning algorithms self-implemented for understanding.
MultiOmicsGraphEmbedding
A PyTorch-based package for representation learning on heterogeneous networks. It aims to facilitate experimentation on different GNN models, metrics, and datasets from PytorchGeometric, DGL, networkx.
nuclei-segmentation
Getting my hand dirty on nuclei detection and segmentation algorithms on Whole-Slide Pathology Images
OpenOmics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
JonnyTran's Repositories
JonnyTran/OpenOmics
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
JonnyTran/microRNA-Lung-Cancer-Associations
An association study to identify a robust miRNA biomarker signature at various stages of lung cancer.
JonnyTran/MultiOmicsGraphEmbedding
A PyTorch-based package for representation learning on heterogeneous networks. It aims to facilitate experimentation on different GNN models, metrics, and datasets from PytorchGeometric, DGL, networkx.
JonnyTran/nuclei-segmentation
Getting my hand dirty on nuclei detection and segmentation algorithms on Whole-Slide Pathology Images
JonnyTran/bash-handbook
:book: For those who wanna learn Bash
JonnyTran/LATTE
Layer-stacked Attention for Heterogeneous Graph Embedding
JonnyTran/LATTE2GO
Protein function prediction by incorporating knowledge graph representation of heterogeneous interactions and Gene Ontology
JonnyTran/BICCN_MOp_miniatlas
https://www.nature.com/articles/s41586-021-03500-8#Sec4
JonnyTran/cache
Cache dependencies and build outputs in GitHub Actions
JonnyTran/dask-labextension
JupyterLab extension for Dask
JonnyTran/dawn-teach-math
JonnyTran/DeepGraphGO
DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
JonnyTran/dgl
Python package built to ease deep learning on graph, on top of existing DL frameworks.
JonnyTran/dgl-ke
High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.
JonnyTran/fastapi-vercel
JonnyTran/GitHubGraduation-2021
Join the GitHub Graduation Yearbook and "walk the stage" on June 5.
JonnyTran/Jonny.bio
JonnyTran/JonnyTran
JonnyTran/jonnytran.github.io
Nhat (Jonny) Tran's academic personal websites
JonnyTran/Mobi_signup
JonnyTran/OGB-LSC2
Docker set up for the OGB Large Scale Challenge with graph neural networks
JonnyTran/OpenNE
An Open-Source Package for Network Embedding (NE)
JonnyTran/pyopensci.github.io
This is the website for pyOpenSci. Contributions welcome!!
JonnyTran/RDATKit
RNA Data (RDAT) read/write scripts
JonnyTran/rna2rna_supp_materials
Supplementary materials for PSB submission
JonnyTran/siamese-triplet
Siamese and triplet networks with online pair/triplet mining in PyTorch
JonnyTran/starter-hugo-research-group
JonnyTran/swingfire.github.io
Lindy Camping!
JonnyTran/vue-pdf-highlighter
JonnyTran/vue-pdfjs-viewer
Vue wrapper components for the pdfjs library