Pinned Repositories
loupeR
Convert Seurat objects to 10x Genomics Loupe files.
APEC
Single cell epigenomic clustering based on accessibility pattern
ATAC-pipe
Analysis pipeline for ATAC-seq Data
images
upic图床
Malignant_Scripts
MiScan
Breast cancer prediction using deep learning
Mitosis_code
Available code for paper: "Yu, Qiaoni, et al. "Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution." Science Advances 9.4 (2023): eadd2175."
scMalignantFinder
scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells from their normal counterparts.
omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
Cottrazm
Construct Tumor Transition Zone Microenvironment
Jonyyqn's Repositories
Jonyyqn/scMalignantFinder
scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells from their normal counterparts.
Jonyyqn/APEC
Single cell epigenomic clustering based on accessibility pattern
Jonyyqn/ATAC-pipe
Analysis pipeline for ATAC-seq Data
Jonyyqn/images
upic图床
Jonyyqn/Malignant_Scripts
Jonyyqn/MiScan
Breast cancer prediction using deep learning
Jonyyqn/Mitosis_code
Available code for paper: "Yu, Qiaoni, et al. "Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution." Science Advances 9.4 (2023): eadd2175."