Joon-Klaps/viralgenie

Annotate final contigs with species AND segment name

Closed this issue · 2 comments

Joon-Klaps commented

Description of feature

Annotate the final contig overview table with species and segment name. The challenge here will be to find a good way to identify the segment correctly.

Joon-Klaps commented

However, this is using regular blastn search to a refseq database which returns a lot of false positives.
Alternatives here are:

  • tblastx
  • mmseqs search