viral-metagenomics
There are 16 repositories under viral-metagenomics topic.
WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
linxingchen/cobra
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
esteinig/vircov
Viral genome coverage evaluation for metagenomic diagnostics :drop_of_blood:
metagentools/VStrains
VStrains is a de novo approach for reconstructing strains from viral quasispecies.
nf-core/vipr
Assembly and intrahost / low-frequency variant calling for viral samples
medvir/VirMet
Set of tools for viral metagenomics.
agudeloromero/EVEREST
Viral genome assemble and characterisation
Joon-Klaps/viralgenie
Detect iSNV and construct whole viral genomes from metagenomic samples
aidenlab/BEAR
BEAR: viral diagnostic analysis pipeline for SARS-CoV-2
OpenOmics/metavirs
Viral Metagenomics Assembly and Annotation Pipeline
OpenOmics/nanite
A streamlined Oxford Nanopore Viral Metagenomics Pipeline
cvisb/cvisb_data
Data portal and API for Center for Viral Systems Biology (CViSB) data
Strong-Lab/Viral_Classification_in_Metagenomics
This repository contains the data and scripts used in Simulation Study of Viral Contiguous Sequence Identification Tools
Alepidoptera7/k-means-to-BLAST-
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
pooranibcbb/virome-pipeline
This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.