WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
PythonGPL-3.0
Issues
- 5
Fix `DRAM-setup.py` v1.5.0 for missing `)`
#339 opened by npavlovikj - 2
annotate genes using faa fasta files
#329 opened by avera1988 - 0
- 0
Pathway abundances?
#357 opened by Manso002 - 3
errors when prepare database
#349 opened by mengyuan-JI - 1
Changing order of genomes in DRAM distill HTML output
#356 opened by iwilkie - 0
set_database_locations results in TypeError: DatabaseHandler.set_database_paths() got an unexpected keyword argument 'camper_tar_gz_loc'
#355 opened by jehalter0 - 0
pop out errors when prepare databases
#354 opened by lingc31415 - 1
VOGDB does not import correctly
#353 opened by nactopus - 0
- 6
Fail in processing vogdb
#341 opened by ShangLiii - 1
Selection logic for gene_id in amg_summery.tsv
#350 opened by diego00012138 - 2
- 1
bug in `v.1.5.0` on the `DRAM-setup.py` help message
#334 opened by hariszaf - 3
- 2
- 3
How long does populating step take?
#345 opened by jianshu93 - 1
DRAM2 environment.yaml
#346 opened by SF-Dragon - 6
DRAM 1.5.0 installation issues
#330 opened by karenhn - 3
DRAM database installation problem; The subcommand mmseqs createindex DRAM_data/uniref90.20240308.mmsdb DRAM_data/tmp --threads 10 experienced an error
#336 opened by camillaln - 3
problem about dramv-annotate
#335 opened by xjhzjucas - 1
- 0
- 0
Need help in processing of database
#343 opened by sahilrishav2 - 0
Need help in preparation of database
#344 opened by sahilrishav2 - 2
Continue the "prepare_database" process
#333 opened by chenyj8 - 4
VOGDB issue--extra enclosing folder
#340 opened by schmigle - 1
cazy annotation format for version 1.4.6
#338 opened by Ales-ibt - 6
- 3
dbcan2 url gone ??
#331 opened by EricDeveaud - 1
key error: K01566 when using DRAM-v.py annotate
#328 opened by yyyuechen - 0
Problem with DRAM databases installation
#322 opened by apazminov - 2
- 0
Is my DRAM_v run successful?
#327 opened by fhdbqr - 0
What KEGG .pep files do DRAM devs use for KEGG.pep (and others if they want to comment!)
#325 opened by caity-s - 0
How to speed up the operation?
#324 opened by qkqk-hub - 0
DRAM-v.py annotate
#323 opened by hgingras - 0
cazy annotations missing in distill heatmap
#319 opened by Aiswarya-prasad - 0
Error setting up databases DRAM_data/tmp/10969822372036018711/createindex.sh: line 56: 1115772 Killed
#317 opened by ileleiwi - 0
Unable to specify database locations
#316 opened by lingrongjin - 3
DRAM running time
#310 opened by pabloati - 1
Downloading CAMPER db
#313 opened by ZarulHanifah - 1
- 0
- 1
Databases used in DRAM
#308 opened by dcm9123 - 3
- 1
- 1
Figure output missing
#311 opened by moyn413 - 5
I have some trouble in using DRAM.py annotate
#309 opened by microbial-cookie - 0