Repository containing commands and scripts to generate the genome assemblies and perform the comparative genomics analyses. The genome sequence and raw data of Hs-IRS is available under NCBI Bioproject PRJNA767548, the genome sequence and raw data of Gp-D383 is available under NCBI BioProject PRJNA764088
The detailed pipeline description with the exact commands used is explained in Assembly/). Various custom scripts used in the pipeline are available in the folder Assembly/ and on https://github.com/Jorisvansteenbrugge/GROS_genomes/tree/main/Assembly
Gene predictions were done as described in BRAKER_grene_predictions.md