Pinned Repositories
advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
advbioinf
These files are from a course I am currently taking
algorithms
alphafill
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
TbasCO
Jorisvansteenbrugge's Repositories
Jorisvansteenbrugge/TbasCO
Jorisvansteenbrugge/advanced-shiny
Shiny tips & tricks for improving your apps and solving common problems
Jorisvansteenbrugge/algorithms
Jorisvansteenbrugge/alphafill
AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the models can be more easily appreciated in terms of function and structure integrity.
Jorisvansteenbrugge/Assign-Taxonomy-with-BLAST
Assign taxonomy with blast, can be used for qiime
Jorisvansteenbrugge/Augustus
Genome annotation with AUGUSTUS
Jorisvansteenbrugge/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
Jorisvansteenbrugge/condarecipes
Jorisvansteenbrugge/createpanelrefs
Generate Panel of Normals, models or other similar references from lots of samples
Jorisvansteenbrugge/dammit
just annotate it, dammit!
Jorisvansteenbrugge/docker-apollo
:whale: Apollo 2.X Docker Image
Jorisvansteenbrugge/FunnerGuild
Custom funguild implementation
Jorisvansteenbrugge/GapFiller
Jorisvansteenbrugge/GROS_genomes
Jorisvansteenbrugge/Gros_Gpal_Hsch
Jorisvansteenbrugge/Incisive
Jorisvansteenbrugge/Jorisvansteenbrugge.github.io
Jorisvansteenbrugge/kentUtils
UCSC command line bioinformatic utilities
Jorisvansteenbrugge/metagMisc
Miscellaneous functions for metagenomic analysis.
Jorisvansteenbrugge/microbial
Do microbiome analysis with dada2 and phyloseq object
Jorisvansteenbrugge/MicrobiomePesticidesESP
Jorisvansteenbrugge/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Jorisvansteenbrugge/nematode_protein_folding
Jorisvansteenbrugge/personal_configs
personal configuration files
Jorisvansteenbrugge/pita
Pipeline to improve transcript annotation based on RNA-seq and ChIP-seq data.
Jorisvansteenbrugge/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
Jorisvansteenbrugge/RCy3
New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
Jorisvansteenbrugge/rfam-toolkit
Jorisvansteenbrugge/ThesisScripts
Jorisvansteenbrugge/tracktools