Pinned Repositories
450kAnalysisWorkshop
BioinfoSummer2015 450k methylation analysis workshop
amnio-cell-free-RNA
Differential gene expression analysis of cell free RNAseq data from amniotic fluid.
binf-scripts
A collection of useful bioinformatics scripts.
bpipe-pipelines
Basic bpipe pipeline stages and pipelines for RNA/DNAseq analysis.
cpipe
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
paed-BAL-meth-ref
Development of a genome-wide DNA methylation reference panel for constituent cell types of Bronchoalveolar Lavage.
methyl-geneset-testing
MethylationAnalysisWorkflow
A cross-package Bioconductor workflow for analysing methylation array data
missMethyl
Bioconductor package for analysis of methylation data from Illumina's Infinium HumanMethylation arrays.
paed-cf-cite-seq
JovMaksimovic's Repositories
JovMaksimovic/bpipe-pipelines
Basic bpipe pipeline stages and pipelines for RNA/DNAseq analysis.
JovMaksimovic/450kAnalysisWorkshop
BioinfoSummer2015 450k methylation analysis workshop
JovMaksimovic/amnio-cell-free-RNA
Differential gene expression analysis of cell free RNAseq data from amniotic fluid.
JovMaksimovic/binf-scripts
A collection of useful bioinformatics scripts.
JovMaksimovic/cpipe
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
JovMaksimovic/paed-BAL-meth-ref
Development of a genome-wide DNA methylation reference panel for constituent cell types of Bronchoalveolar Lavage.
JovMaksimovic/methyl-seq_bpipe
bpipe script for QC, alignment and methylation calling for bisulfite sequencing "methyl-seq" data
JovMaksimovic/missMethyl
JovMaksimovic/myproject
JovMaksimovic/RNAseq-R
RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/