Julia-Epi

Julia-Epi's Stars

• UniTo-SEPI/COVID-19_Piedmont

  COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.

  Language:Julia71

• TuringLang/Turing.jl

  Bayesian inference with probabilistic programming.

  Language:Julia2.1k219

• cambridge-mlg/Covid19

  Language:Jupyter Notebook353

• pitmonticone/EpiSimulator

  EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

  Language:Jupyter Notebook81

• cran/surveillance

  :exclamation: This is a read-only mirror of the CRAN R package repository. surveillance — Temporal and Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena. Homepage: https://surveillance.R-Forge.R-project.org/

  Language:R116

• covid19br/nowcaster

  Repository to the R package nowcaster, nowcasting with INLA

  Language:R185

• InPhyT/.github

  Special repository containing the profile directory of InPhyT.

  3

• rosannaclairebarnard/covidm-mtd-Omi

  Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).

  Language:R111

• epiverse-trace/readepi

  An R package for importing epi data into R.

  Language:R65

• mrc-ide/infectiousdiseasemodels-2022

  Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases - 2022

  Language:R6

• Rose-STL-Lab/Hierarchical-Neural-Processes

  Language:Python71

• epiforecasts/scoringutils

  Utilities for Scoring and Assessing Predictions

  Language:R4921

• epiforecasts/EpiNow2

  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

  Language:R11733

• epinowcast/epinowcast

  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

  Language:R5821

• JuliaHealth/ICD_GEMs.jl

  ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

  Language:Julia173

• InPhyT/UnrollingAverages.jl

  A Julia package to deconvolve ("unroll") moving averages of time series to get the original ones back.

  Language:Julia192

• InPhyT/COVID19-Italy-Integrated-Surveillance-Data

  COVID-19 integrated surveillance data provided by the Italian Institute of Health and processed via UnrollingAverages.jl to deconvolve the weekly moving averages.

  Language:Julia314

• JuliaGraphs/MultilayerGraphs.jl

  A Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs.

  Language:Julia1213