Pinned Repositories
2020-August-Advanced-scRNAseq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
Analysis-of-lncRNA-and-CNV
Analysis-Tutorials
bioinformatic analysis tutorials and pipelines
awesome-R
A curated list of awesome R packages, frameworks and software.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
BasicBioinformaticsAnalysisFromZhongShan
Launch Usual Clinical tool for Kind Yield
Bulk_RNA-Seq_Workflow_Snakemake
STAR, cufflinks, cluster, DESeq2, GO analysis
CellReportsManuscript
This repository contains scripts associated with the Cell Reports manuscript.
PathCNN
Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma
scRNAseq-XY
JunjuanZheng's Repositories
JunjuanZheng/PathCNN
Interpretable convolutional neural networks on multi-omics data predict long-term survival in glioblastoma
JunjuanZheng/2020-August-Advanced-scRNAseq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
JunjuanZheng/Analysis-Tutorials
bioinformatic analysis tutorials and pipelines
JunjuanZheng/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
JunjuanZheng/Bulk_RNA-Seq_Workflow_Snakemake
STAR, cufflinks, cluster, DESeq2, GO analysis
JunjuanZheng/CellReportsManuscript
This repository contains scripts associated with the Cell Reports manuscript.
JunjuanZheng/chipster-tools
Chipster analysis tool scripts
JunjuanZheng/CITE-seq-TCR_paper
JunjuanZheng/COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets
JunjuanZheng/djvdj
An R package to analyze AVID-seq data
JunjuanZheng/excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
JunjuanZheng/GeneTEFlow
JunjuanZheng/Immunologic_changes_with_chemotherapy_inTNBC
Code used for figure generation for "Changes in peripheral and local tumor immunity after neoadjuvant chemotherapy reshape clinical outcomes"
JunjuanZheng/inferCC
Lung cancer 10X analysis
JunjuanZheng/KDD20-tutorial
Tutorial on Automated Machine Learning at KDD 2020
JunjuanZheng/Lee_et_al_2020_Nature
Repository for scripts used for analysis in Lee at al. 2020 "Hair-bearing human skin generated entirely from pluripotent stem cells."
JunjuanZheng/metaworkflow
Online workflow guidelines for metabolomics
JunjuanZheng/MOVICS
Multi-Omics integration and VIsualization in Cancer Subtyping
JunjuanZheng/PaperWork-scRNA-GSE111527-mouseSVZ
Reanalyze of GSE111527 scRNA-seq data
JunjuanZheng/R
my R codes depository
JunjuanZheng/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
JunjuanZheng/SCENICprotocol
A scalable SCENIC workflow for single-cell gene regulatory network analysis
JunjuanZheng/scrna2019
supporting code for the multinomial single cell RNA-Seq paper
JunjuanZheng/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
JunjuanZheng/Sequence-Mapping
JunjuanZheng/singleCellHaystack
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
JunjuanZheng/SPlab_BecomingLTi
JunjuanZheng/vdjmisc
Miscellaneus Tools for The Analysis of Immune Repertoires
JunjuanZheng/Within_Subject
Codes for Within Subject Memory Encoding project
JunjuanZheng/yipCat
yipCat package to realize some functional tools