JunjuanZheng

JunjuanZheng's Stars

• Z-Siqi/Clash-for-Windows_Chinese

  clash for windows汉化版. 提供clash for windows的汉化版, 汉化补丁及汉化版安装程序

  Language:JavaScript23.6k1012223k

• getlantern/lantern

  Lantern官方版本下载 蓝灯 翻墙 代理 科学上网 外网 加速器 梯子 路由 - Быстрый, надежный и безопасный доступ к открытому интернету - lantern proxy vpn censorship-circumvention censorship gfw accelerator پراکسی لنترن، ضدسانسور، امن، قابل اعتماد و پرسرعت

  Language:Go14.8k499011.2k

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.5k64320671

• bowang-lab/scGPT

  Language:Jupyter Notebook1.2k33255243

• OmicsML/awesome-deep-learning-single-cell-papers

  74534597

• zhanghao-njmu/SCP

  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

  Language:R4648138100

• KrishnaswamyLab/MAGIC

  MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

  Language:Jupyter Notebook3522114694

• xlucpu/MOVICS

  Multi-Omics integration and VIsualization in Cancer Subtyping

  Language:R13961644

• snap-stanford/SATURN

  Language:Jupyter Notebook11858520

• Dragonlongzhilin/RenalTumor

  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma

  Language:Jupyter Notebook771832

• atarashansky/SAMap

  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.

  Language:Jupyter Notebook72912920

• theislab/scib-pipeline

  Snakemake pipeline that works with the scIB package to benchmark data integration methods.

  Language:Python6954529

• combiz/scFlow

  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

  Language:R56717414

• Papatheodorou-Group/BENGAL

  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets

  Language:Python36598

• JiaqiLiZju/CelltypeEvolution

  Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases

  Language:Jupyter Notebook18113

• lifei176/Single-cell-atlas-of-sex-differences-and-androgen-effects

  Language:R17218

• neurogenomics/scKirby

  Automated ingestion and conversion of various single-cell data formats, within and across species

  Language:R12172

• csbg/neuroblastoma

  Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

  Language:Jupyter Notebook9101

• mbarkdull/FormicidaeMolecularEvolution

  Scripts and how-tos for comparative genomics work.

  Language:R9206

• xsun28/scRNAIdent

  Language:R9205

• NathanSkene/One2One

  This package is used to get 1:1 orthologs based on MGI homology data from http://www.informatics.jax.org/homology.shtml

  Language:R7216

• kullrich/orthomap

  orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

  Language:Python6211

• colin-leeyc/CLpseudobulk

  Pseudobulk analysis for scRNAseq with bootstrapping

  Language:R5210

• gillislab/Coexpression_Proxies

  Language:Jupyter Notebook5110

• mvab/mr_sleep_traits_breast_cancer

  Language:R5102

• wangmingcheng/SingleCell

  Language:HTML3102

• gillislab/Primate-MTG-coexpression

  Conserved coexpression at single cell resolution across primate brains

  Language:R2101

• koodikoira/T2D_AD_MR

  Assessment of Causal Association Between Type 2 Diabetes and Alzheimer's Disease with Mendelian Randomisation. This project demonstrates Two-Sample Mendelian Randomisation (2SMR) pipeline with TwoSampleMR R library.

  2101

• galicae/comandos

  Advanced visualizations for the comparison of single-cell datasets. Conceived as a SAMap add-on, but does not require it.

  Language:Jupyter Notebook1120

• Nikhilesh-Vasanthakumar/Immune-Complexity-and-Regenerative-Dynamics-in-Pleurodeles-waltl

  Language:Jupyter Notebook1100