zhanghao-njmu/SCP

Issues

• 关于Seurat版本更新后的使用问题

  #229 opened a year ago by kikokhalifa
  3

• RunPAGA: Error in slot(object = object, name = "features")[[layer]] <- features

  #264 opened 2 months ago by ChloeHJ
  0

• CellDimPlot doesn't work

  #260 opened 4 months ago by Gbourm
  3

• problem RunPAGA

  #225 opened a year ago by JoelHaas
  2

• SCP安装于seurat版本搭配问题。

  #261 opened 3 months ago by PanSX-Dr
  1

• Error in CellCorHeatmap()

  #231 opened a year ago by redtorrentCN
  2

• Error in FUN(X[[i]], ...) : trying to get slot "cell.embeddings" from an object of a basic class ("integer") with no slots

  #263 opened 3 months ago by Yansong-weilab
  0

• GroupHeatmap Legend

  #262 opened 3 months ago by Shiyanth
  0

• How to input analysed data via seurat into SCP？

  #256 opened 4 months ago by 183136
  1

• 许多figure绘图之后只是白板，并不显示

  #258 opened 4 months ago by AcetylCoALab
  1

• MAC M3安装问题，PrepareEnv()配置，Rstudio就崩溃

  #257 opened 4 months ago by huaxueyangyun
  1

• Error with RunCellQC with seuratV5 object

  #252 opened 5 months ago by Kiliankleemann
  3

• Problems with the RunSlingshot() function

  #242 opened 7 months ago by leo971001
  4

• Some mistakes in RunCellQC function

  #255 opened 5 months ago by YongjieWangSarcoma
  0

• a warning for SCP calling ggplot2 version > 3.4.X

  #254 opened 5 months ago by Shiywa
  0

• Installing the toolkit on a public server is quite difficult. Is there a packaged Docker version available?

  #253 opened 5 months ago by baconchan
  0

• Volcano plot

  #251 opened 5 months ago by yshs01
  0

• RStudio crashed when executing RunPAGA() function

  #250 opened 6 months ago by whiteSongLin
  0

• The plot size of the FeatureHeatmap function is incorrect.

  #249 opened 6 months ago by UnseenAnchor
  1

• Heatmap - selective row labeling even when show_row_names set to FALSE

  #248 opened 6 months ago by bapoorva
  1

• Heatmap

  #247 opened 6 months ago by Morriseylab
  0

• error in "RunKNNPredict" and "CellCorHeatmap"

  #246 opened 7 months ago by CCCBBG
  0

• DynamicHeatmap issue

  #238 opened 9 months ago by wangtanzhang612
  3

• Issue on installation: object ‘LayerData<-’ is not exported by 'namespace:SeuratObject'

  #236 opened 9 months ago by xiaodiYan
  9

• How to customize the order of groups within the FeatureStatPlot function

  #245 opened 7 months ago by jphe
  3

• Slingshot Warning

  #237 opened 9 months ago by wangtanzhang612
  5

• error in calculate trajectory

  #244 opened 7 months ago by rdf1993
  0

• Negative P-Values RunDynamicFeatures()

  #243 opened 7 months ago by imev2023
  0

• how to use Runharmony function in SCP ?

  #241 opened 8 months ago by fangzhoufan
  0

• Spelling mistake in the GSEAPlot

  #239 opened 8 months ago by PietroD
  0

• GSEA error

  #212 opened a year ago by rdf1993
  2

• 版本更新问题

  #222 opened a year ago by Portulaca666
  3

• error in RunCellQC

  #213 opened a year ago by yangtao38324
  1

• Question about several functions in SCP

  #227 opened a year ago by Cathearty
  1

• The angle parameter doesn't work in the theme function

  #235 opened 9 months ago by Sophia409
  1

• how to reduce run time for RunDynamicFeatures

  #234 opened 9 months ago by nbutyrate
  0

• Why is the number of DEGs output by FeatureHeatmap largely lower than that obtained from RunDEtest?

  #233 opened 9 months ago by Sophia409
  1

• miniconda installation failed [exit code 2]

  #228 opened 10 months ago by Organacids
  2

• 一点点小建议

  #232 opened 10 months ago by schnappi-wkl
  0

• Package conflicts with dependencies

  #224 opened a year ago by ayyildizd
  1

• Upgrade to work with Seurat5?

  #230 opened a year ago by sebastiangornik
  0

• RunDEtest and FeatureHeatmap-enrichment take too long on my own dataset and can't run

  #221 opened a year ago by browningChen
  2

• Get errors when retrieving information from the BioMart database

  #215 opened a year ago by ZyRose1
  1

• Obtain associated p values for CellCorHeatmap

  #226 opened a year ago by ChristinaSteyn
  0

• There are two types of gene names and some gene names are missing when I use 'GroupHeatmap’

  #216 opened a year ago by wyr997-323
  1

• Error in t.default(srt@assays[[assay]]@data[intersect(cell_annotation, : 参数不是矩阵

  #223 opened a year ago by schnappi-wkl
  1

• library(SCP) Error: package or namespace load failed for ‘SCP’: object ‘LayerData<-’ is not exported by 'namespace:SeuratObject'

  #218 opened a year ago by Jzwing
  2

• Error: 'keyword_enrichment_from_GO' is not an exported object from 'namespace:simplifyEnrichment'

  #219 opened a year ago by Jzwing
  1

• Error: Cannot create zero-length unit vector ("unit" subsetting) (ht <- DynamicHeatmap)

  #220 opened a year ago by 31474molly
  0

• Error: Cannot find assay 'SCT' in this Seurat object ?

  #214 opened a year ago by xflicsu
  0