JuseTiZ

JuseTiZ's Stars

• intbio/seqplot

  Making plots with x-axis annotated with an image of a protein/DNA sequence or MSA

  Language:Jupyter Notebook11

• broadinstitute/regional_missense_constraint

  Code to calculate regional missense constraint

  Language:Python131

• Matt-OP/hillclimbers

  A python module that uses hill climbing to iteratively blend machine learning model predictions.

  Language:Python434

• BlackPearl-Lab/KddCup-2024-OAG-Challenge-1st-Solutions

  Language:Python12929

• odelaneau/shapeit5

  Segmented HAPlotype Estimation and Imputation Tool

  Language:C++7011

• facebookresearch/fairseq

  Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

  Language:Python30.5k6.4k

• ImagineAILab/ai-by-hand-excel

  1.4k196

• nhgritctran/PheTK

  PheTK Official Repository

  Language:Python101

• mhguo1/TRAPD

  Burden testing against public controls

  Language:Python5032

• MutonAI/Mu-Former

  Language:Python102

• Richard-Packer/DeepPheWAS

  An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)

  Language:R116

• Schraiber/drevil

  Infer demography, mutation, and selection from millions of genomes

  Language:R3

• PheWAS/PheWAS

  The PheWAS R package

  Language:R12956

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.2k152

• rivas-lab/public-resources

  Repository for resources we'd like to share with the community.

  Language:Jupyter Notebook2411

• erdogant/hgboost

  hgboost is a python package for hyper-parameter optimization for xgboost, catboost or lightboost using cross-validation, and evaluating the results on an independent validation set. hgboost can be applied for classification and regression tasks.

  Language:Python6017

• bin862324915/valine-admin

  一个 Valine 的拓展应用，用来增强 Valine 的邮件通知。

  Language:JavaScript51

• getian107/SuSiEx

  Cross-population fine-mapping

  Language:C++265

• NVIDIA/open-gpu-kernel-modules

  NVIDIA Linux open GPU kernel module source

  Language:C15.2k1.3k

• google-research/vision_transformer

  Language:Jupyter Notebook10.4k1.3k

• hengck23/solution-leash-BELKA

  Language:Python105

• ShixiangWang/sigminer

  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

  Language:R14519

• huangyh45/PhyloAln

  PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era

  Language:Python122

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 in Pytorch

  Language:Python1.2k140

• AlexandrovLab/SigProfilerAssignment

  Assignment of known mutational signatures to individual samples and individual somatic mutations

  Language:Python4610

• parklab/MuSiCal

  A comprehensive toolkit for mutational signature analysis

  Language:Python315

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.2k641

• CompGenomeLab/xr-ds-seq-snakemake

  This repository contains xr-seq and damage-seq pipelines.

  Language:Python4

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.8k542

• Cloufield/GWASTutorial

  GWAS Tutorial for Beginners

  Language:Jupyter Notebook17343