Pinned Repositories
biobloom
Create Bloom filters for a given reference and then use it to categorize sequences
btl_bloomfilter
The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.
adv-r
Advanced R programming: a book
JupiterPlot
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
ntsm
This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps.
stat540_2014
STAT540 Statistical Methods for High Dimensional Biology, January - April 2014
STAT545A_MovieStats
Exploratory analysis of Movie preference data set from http://grouplens.org/datasets/movielens/
JustinChu's Repositories
JustinChu/JupiterPlot
A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
JustinChu/ntsm
This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps.
JustinChu/STAT545A_MovieStats
Exploratory analysis of Movie preference data set from http://grouplens.org/datasets/movielens/
JustinChu/adv-r
Advanced R programming: a book
JustinChu/stat540_2014
STAT540 Statistical Methods for High Dimensional Biology, January - April 2014
JustinChu/REX-Group-9
JustinChu/bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
JustinChu/biobloom
Bloom filter for bioinformatics
JustinChu/bioconda-recipes
Conda recipes for the bioconda channel.
JustinChu/cjustin.utils
Package containing a personal set of function for R.
JustinChu/compact_vector
Bit packed vector of integral values
JustinChu/FastqMultiThreadProducerConsumer
Example program for efficient multithread producer-consumer I/O with kseq
JustinChu/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers
JustinChu/homebrew-science
:microscope: Scientific formulae for the Homebrew package manager
JustinChu/PackedArray
Random access array of tightly packed unsigned integers
JustinChu/PGRT
JustinChu/post_alea
post alea analysis pipeline for allele specific genes and transposible elements
JustinChu/r_utils
Set of personal use utility functions for R bundled into a package
JustinChu/SaveOurShip2Experimental
Experimental branch of Save Our Ship 2
JustinChu/sdust
Symmetric DUST for finding low-complexity regions in DNA sequences
JustinChu/SeqGroupClassifier
JustinChu/seqtk
Toolkit for processing sequences in FASTA/Q formats
JustinChu/serratus
Ultra-deep Coronavirus Homology Search
JustinChu/spaced-seeds
Scripts to empirically show how spaced seed entropy is related to their sensitivity for homology search.
JustinChu/stat540-2014-chu-justin
JustinChu/stat540-2014-chu-justin-hw
JustinChu/STAT545A