Issues
- 2
- 2
Effect of mapping parameters
#43 opened by tanpham15 - 1
Problems with the aesthetics of the plot
#44 opened by jacolmen - 4
- 5
- 2
Set links between chromosomes
#36 opened by Karimi-81 - 4
- 2
- 1
Fix problems on Mac OS
#29 opened by JustinChu - 1
Add option to place overlapping contigs
#14 opened by JustinChu - 1
- 1
Show poorly aligned regions of the scaffold with some sort of mark (like how gaps are shown)
#4 opened by JustinChu - 2
Add additional columns to seqOrder to show intended (median) location of alignment of scaffolds
#15 opened by JustinChu - 1
- 1
Request: Option to always show all contigs
#42 opened by alexweisberg - 13
No links despite large regions of similarity visible in dot plot from MUMMER alignment
#38 opened by mptrsen - 4
- 1
Reciprocity of matching regions
#37 opened by ckeeling - 0
Link files change chromosome names
#40 opened by mpalmada - 0
No Y chromosome
#39 opened by imdanique - 1
Add option to easily change alpha of links
#11 opened by JustinChu - 1
Add option to remove chr names from output
#16 opened by JustinChu - 1
- 1
- 0
- 2
Running failure
#34 opened by JQVazquez - 4
circos plotting error
#26 opened by mjmillerlab - 5
chromosome has no alignments!
#27 opened by drashwinelkar - 1
- 3
Change path for Samtools
#22 opened by wlaw13 - 2
numbers of scaffold to render & their order
#20 opened by scintilla9 - 2
Change color of the output and replot
#19 opened by scintilla9 - 0
Experiment with minimap2 alignments
#12 opened by JustinChu - 2
Change labels and re-plot
#18 opened by gbdias - 1
List of non-standard modules needed
#13 opened by ckeeling - 1
- 1
- 1
- 7
recipe failure for the bed file
#5 opened by mroach-awri - 2
- 0