Pinned Repositories
AbsPresTree
Create a phylogenetic tree with an absence/presence matrix of biosynthetic gene clusters
antismash
antiSMASH
automlst-simplified-wrapper
A fork of autoMLST with a simplified wrapper script bypassing additional organism selection.
CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
dmz-antismash
antiSMASH with manual cluster splitting
fieldbioinformatics-update-longshot
The ARTIC field bioinformatics pipeline
magician
Artificial MAGs from existing genomes
magician-singularity-containers
Singularity containers for tools using the MAGICIAN pipeline
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
singularity-bbmap-metabat
Standalone Singularity file for Metabat2 and BBMap 36.49
KatSteinke's Repositories
KatSteinke/AbsPresTree
Create a phylogenetic tree with an absence/presence matrix of biosynthetic gene clusters
KatSteinke/magician
Artificial MAGs from existing genomes
KatSteinke/antismash
antiSMASH
KatSteinke/automlst-simplified-wrapper
A fork of autoMLST with a simplified wrapper script bypassing additional organism selection.
KatSteinke/CAMISIM
CAMISIM: Simulating metagenomes and microbial communities
KatSteinke/dmz-antismash
antiSMASH with manual cluster splitting
KatSteinke/fieldbioinformatics-update-longshot
The ARTIC field bioinformatics pipeline
KatSteinke/magician-singularity-containers
Singularity containers for tools using the MAGICIAN pipeline
KatSteinke/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
KatSteinke/singularity-bbmap-metabat
Standalone Singularity file for Metabat2 and BBMap 36.49
KatSteinke/singularity-camisim-standalone
Standalone Singularity file for CAMISIM fork
KatSteinke/singularity-drep-standalone
Standalone Singularity file for drep