KatherLab/deepmed

Issues

• Bug in training with small datasets and potentially with MIL

  #40 opened 2 years ago
  0

• enable compatibility with SLAM

  #39 opened 3 years ago
  0

• Fix deployment for auto-binarized targets

  #38 opened 3 years ago
  1

• Fix missing imports

  #37 opened 3 years ago
  0

• add tile-level heatmaps to output

  #36 opened 2 years ago
  0

• descriptive cohort statistics as output

  #35 opened 3 years ago
  0

• rename result file as project dir

  #34 opened 2 years ago
  0

• rename deepest histology to deep med

  #33 opened 3 years ago
  0

• Deployment currently fails for continuous targets

  #32 opened 3 years ago
  0

• New title for the repo

  #31 opened 3 years ago
  4

• SVG export DPI for raster graphics

  #30 opened 3 years ago
  0

• add alternative models: VIT, CLAM, MIL

  #29 opened 3 years ago
  1

• Write cross validation training and testing sets to files immediately

  #28 opened 3 years ago
  0

• Use model checkpoint to resume training upon restart

  #27 opened 3 years ago
  1

• add dependencies to readme

  #26 opened 3 years ago
  0

• Run multiple runs in parallel

  #25 opened 3 years ago
  1

• Investigate CUDA memory leak

  #24 opened 3 years ago
  2

• Sample validation set in a stratified fashion

  #23 opened 3 years ago
  1

• Output graphs as SVGs

  #22 opened 3 years ago
  0

• Handling classes with too little patients

  #21 opened 3 years ago
  1

• Allow setting max_tile_num for training and testing sets seperately

  #20 opened 3 years ago
  0

• Add option for weighed loss functions

  #19 opened 3 years ago
  0

• Immediately apply metrics to runs

  #18 opened 3 years ago
  0

• Add heatmaps to statistics

  #17 opened 3 years ago
  0

• Also output dataset class distribution when loading already generated runs

  #16 opened 3 years ago
  0

• Use augmentation

  #15 opened 3 years ago
  0

• Color messages according to log level

  #14 opened 3 years ago
  0

• Add option for custom N/A labels

  #13 opened 3 years ago
  0

• Add option to select which GPU to use

  #12 opened 3 years ago
  0

• Connect the GUI

  #11 opened 3 years ago
  0

• Write a basic but nice readme

  #10 opened 3 years ago
  0

• Don't train on labels / classes with insufficient support

  #9 opened 3 years ago
  0

• Train on subgroups

  #8 opened 3 years ago
  2

• multi-input models

  #7 opened 3 years ago
  2

• Implement survival loss function

  #6 opened 3 years ago
  1

• Visualization of best tiles for best patients

  #5 opened 3 years ago
  0

• Output ROC curves, confusion matrices

  #4 opened 3 years ago
  1

• Implement AUROC, patient count, p-value statistics

  #3 opened 3 years ago
  1

• Test topic

  #2 opened 3 years ago
  0

• Automatically discretize continuous targets

  #1 opened 3 years ago
  0