Pinned Repositories
cancer-metadata
machine-readable information for the TCGA dataset, mirrored from other sources
deepmed
dl-mri
Deep Learning MRI image analysis
end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
HIA
Histopathology Image Analysis
marugoto
Tools to build deep learning pipelines.
preProcessing
STAMP
Solid Tumor Associative Modeling in Pathology
SWARM
Swarm Learning for computational pathology
swarm-learning-hpe
Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.
Kather Lab at EKFZ / TU Dresden's Repositories
KatherLab/HIA
Histopathology Image Analysis
KatherLab/marugoto
Tools to build deep learning pipelines.
KatherLab/preProcessing
KatherLab/deepmed
KatherLab/dl-mri
Deep Learning MRI image analysis
KatherLab/SWARM
Swarm Learning for computational pathology
KatherLab/end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
KatherLab/STAMP
Solid Tumor Associative Modeling in Pathology
KatherLab/cancer-metadata
machine-readable information for the TCGA dataset, mirrored from other sources
KatherLab/swarm-learning-hpe
Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.
KatherLab/Medical_LLM
Welcome to the Medical LLM repository, your premier gateway to a structured and meticulously designed pipeline exclusively crafted for large language models (LLMs) based medical projects.
KatherLab/preprocessing-ng
KatherLab/llm-agent
LLM agents in medicine
KatherLab/highres-WSI-heatmaps
KatherLab/synth-user-study
A user study investigating how realistic are synthetic images created by generative AI
KatherLab/Survival
KatherLab/wanshi-utils
Ultilities repo for visualizations and result assesments
KatherLab/crc-models-2022
trained deep learning models for biomarker prediction from colorectal cancer pathology slides, 2022 edition
KatherLab/Pathology_Adversarial
KatherLab/preprocessing-radiology
Repo for data preparation, extracting features from radimages. Adapt to marugoto attention MIL and the features are in h5
KatherLab/visualizing_image_embeddings
KatherLab/LLMAnonymizer-Publication
Anonymize Medical Documents using LLMs
KatherLab/MediSwarm
MediSwarm is an open-source project for advancing medical deep learning using swarm intelligence and NVFlare. Developed by the Odelia consortium, it ensures data privacy through federated learning, enabling collaborative, decentralized model training across institutions for improved medical research and applications.
KatherLab/thumbnail-classification
KatherLab/deepmed-gui
GUI for the DeepMed pipeline
KatherLab/Hanta-Virus
KatherLab/heterogeneity-targeted
KatherLab/ImmunotherapyModels
KatherLab/QuPath_scripts
KatherLab/UKBioBank
Repository to incorporate code for the Brain projects