Pinned Repositories
cancer-metadata
machine-readable information for the TCGA dataset, mirrored from other sources
deepmed
dl-mri
Deep Learning MRI image analysis
end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
HIA
Histopathology Image Analysis
LLMAIx
Document Information Extraction & Anonymization using local LLMs
marugoto
Tools to build deep learning pipelines.
preProcessing
STAMP
Solid Tumor Associative Modeling in Pathology
SWARM
Swarm Learning for computational pathology
Kather Lab at EKFZ / TU Dresden's Repositories
KatherLab/HIA
Histopathology Image Analysis
KatherLab/marugoto
Tools to build deep learning pipelines.
KatherLab/STAMP
Solid Tumor Associative Modeling in Pathology
KatherLab/preProcessing
KatherLab/dl-mri
Deep Learning MRI image analysis
KatherLab/end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
KatherLab/LLMAIx
Document Information Extraction & Anonymization using local LLMs
KatherLab/Medical_LLM
Welcome to the Medical LLM repository, your premier gateway to a structured and meticulously designed pipeline exclusively crafted for large language models (LLMs) based medical projects.
KatherLab/swarm-learning-hpe
Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.
KatherLab/highres-WSI-heatmaps
KatherLab/llm-agent
LLM agents in medicine
KatherLab/preprocessing-ng
KatherLab/MediSwarm
MediSwarm is an open-source project for advancing medical deep learning using swarm intelligence and NVFlare. Developed by the Odelia consortium, it ensures data privacy through federated learning, enabling collaborative, decentralized model training across institutions for improved medical research and applications.
KatherLab/joint-mtl-cpath
KatherLab/LLMAnonymizer-Publication
Anonymize Medical Documents using LLMs
KatherLab/wanshi-utils
Ultilities repo for visualizations and result assesments
KatherLab/crc-models-2022
trained deep learning models for biomarker prediction from colorectal cancer pathology slides, 2022 edition
KatherLab/mopadi
MOrphing histoPAthology DIffusion models for explainability of AI pipelines in medical image analysis.
KatherLab/Pathology_Adversarial
KatherLab/preprocessing-radiology
Repo for data preparation, extracting features from radimages. Adapt to marugoto attention MIL and the features are in h5
KatherLab/visualizing_image_embeddings
KatherLab/GraDaCu
Grammar-based Data Curation
KatherLab/prompt_injection_attacks
KatherLab/thumbnail-classification
KatherLab/heterogeneity-targeted
KatherLab/QuPath_scripts
KatherLab/genml
This is a pipeline of feature extraction for genomics mutation using foundation models.
KatherLab/Hanta-Virus
KatherLab/NVFlare_MediSwarm
NVIDIA Federated Learning Application Runtime Environment
KatherLab/UKBioBank
Repository to incorporate code for the Brain projects