Pinned Repositories
cogent3
Comparative Genomics Toolkit 3
Cogent3Workshop
Materials for the Phylomania workshop
DiverseSeq
Tools for analysis of sequence divergence
alignment-free-distance
cogent3
Comparative Genomics Toolkit 3
cogent3.github.io
Contents for cogent3.org
Cogent3Workshop
Materials for the Phylomania workshop
DemoProject
Initial project using click
DiverseSeq
Tools for analysis of sequence divergence
honours_thesis
KatherineCaley's Repositories
KatherineCaley/alignment-free-distance
KatherineCaley/cogent3
Comparative Genomics Toolkit 3
KatherineCaley/cogent3.github.io
Contents for cogent3.org
KatherineCaley/Cogent3Workshop
Materials for the Phylomania workshop
KatherineCaley/DemoProject
Initial project using click
KatherineCaley/DiverseSeq
Tools for analysis of sequence divergence
KatherineCaley/honours_thesis
KatherineCaley/query_cBioPortal
Simple script to download mutation and CNV data from cBioPortal
KatherineCaley/tcga-microbiome-prediction
Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2020), including equivalent models using TCGA RNA-seq gene expression and combined microbial abundance and gene expression for comparison.
KatherineCaley/gbintk
🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit