KennethEnevoldsen/snip

Consult snp embedding

Cherished-l opened this issue · 2 comments

Cherished-l commented

Hi, my current simple considerations are:
After performing plink quality control on the data, extract SNPs (or use known disease-related SNPs) based on disease-related genes, and then use SNPs for feature extraction to achieve disease classification
But I don't know how to extract snp features, I found your github, can you tell me how to use the data after quality control to apply your embedding

KennethEnevoldsen commented

I am sorry this is not a community-maintained repo (it is mainly intended for personal use). It might end up being that after we have finished the tests and written a paper on it, but currently it is not.

Cherished-l commented

thank you very much
Can you give me some advice on how to embedding the snp, I want to send it into the neural network for training (I only pick the snp combinations that I am interested in)