KennethEnevoldsen/snip
A utility package handling Single Nucleotide polymorphism data in Python
PythonMIT
Issues
- 2
Consult snp embedding
#62 opened by Cherished-l - 1
Fix issue w. dataset conversion
#60 opened by KennethEnevoldsen - 1
calculate heritability on chrom 22
#56 opened by KennethEnevoldsen - 0
to learn: fine mapping
#59 opened by KennethEnevoldsen - 0
calculate reconstruction loss
#58 opened by KennethEnevoldsen - 0
try doing PyTorch models in parallel
#57 opened by KennethEnevoldsen - 0
- 0
- 0
fix NAN issue
#46 opened by KennethEnevoldsen - 0
fix nan-loss
#45 opened by KennethEnevoldsen - 0
(auto)-estimate ideal batch size
#44 opened by KennethEnevoldsen - 0
Impute on train and apply to test
#30 opened by KennethEnevoldsen - 0
Test dataset split
#37 opened by KennethEnevoldsen - 0
Implement Slided MLP (with linear activations corresponding to a PCA) (expected time 1-3, due 24th)
#29 opened by KennethEnevoldsen - 0
- 0
New plan
#27 opened by KennethEnevoldsen - 0
add functionality to continue training
#38 opened by KennethEnevoldsen - 0
- 0
If relevant optimize slided MLP to run faster (expected time: unknown, due 27th)
#35 opened by KennethEnevoldsen - 2
- 1
Linear encoding
#12 opened by KennethEnevoldsen - 1
Add test to dataloaders
#13 opened by KennethEnevoldsen